PDB entry 4xkm

View 4xkm on RCSB PDB site
Description: Crystal structure of Xylose Isomerase from an human intestinal tract microbe Bacteroides thetaiotaomicron
Class: isomerase
Keywords: Xylose Isomerase, Bacteroides thetaiotaomicron, ISOMERASE
Deposited on 2015-01-12, released 2015-12-23
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-12-23, with a file datestamp of 2015-12-18.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkma_
  • Chain 'B':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkmb_
  • Chain 'C':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkmc_
  • Chain 'D':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkmd_
  • Chain 'E':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkme_
  • Chain 'F':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkmf_
  • Chain 'G':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkmg_
  • Chain 'H':
    Compound: xylose isomerase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: xylA, BT_0793
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4xkmh_
  • Heterogens: MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4xkmA (A:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmA (A:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4xkmB (B:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmB (B:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4xkmC (C:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmC (C:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4xkmD (D:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmD (D:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4xkmE (E:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmE (E:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4xkmF (F:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmF (F:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4xkmG (G:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmG (G:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4xkmH (H:)
mgsshhhhhhssglvprgshmatkeffpgiekikfegkdsknpmafryydaekvingkkm
kdwlrfamawwhtlcaeggdqfgggtkqfpwngnadaiqaakdkmdagfefmqkmgieyy
cfhdvdlvsegasveeyeanlkeivayakqkqaetgikllwgtanvfgharymngaatnp
dfdvvaraavqiknaidatielggenyvfwggregymsllntdqkrekehlaqmltiard
yarargfkgtfliepkpmeptkhqydvdtetvigflkahgldkdfkvnievnhatlaght
fehelavavdngmlgsidanrgdyqngwdtdqfpidnyeltqammqiirngglgtggtnf
daktrrnstdledifiahiagmdamaralesaaalldespykkmladryasfdggkgkef
edgkltledvvayaktkgepkqtsgkqelyeailnmyc

    Sequence, based on observed residues (ATOM records): (download) 
    >4xkmH (H:)
keffpgiekikfegkdsknpmafryydaekvingkkmkdwlrfamawwhtlcaeggdqfg
ggtkqfpwngnadaiqaakdkmdagfefmqkmgieyycfhdvdlvsegasveeyeanlke
ivayakqkqaetgikllwgtanvfgharymngaatnpdfdvvaraavqiknaidatielg
genyvfwggregymsllntdqkrekehlaqmltiardyarargfkgtfliepkpmeptkh
qydvdtetvigflkahgldkdfkvnievnhatlaghtfehelavavdngmlgsidanrgd
yqngwdtdqfpidnyeltqammqiirngglgtggtnfdaktrrnstdledifiahiagmd
amaralesaaalldespykkmladryasfdggkgkefedgkltledvvayaktkgepkqt
sgkqelyeailnmyc