SCOPe 2.07: Structural Classification of Proteins

PDB entry 4ur7

View 4ur7 on RCSB PDB site
Description: Crystal structure of keto-deoxy-D-galactarate dehydratase complexed with pyruvate
Class: lyase
Keywords: lyase, decarboxylate, biocatalysis, oxidative pathway, d-galacturonic acid
Deposited on 2014-06-26, released 2014-12-17
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-01-28, with a file datestamp of 2015-01-23.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.1637
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: keto-deoxy-d-galactarate dehydratase
Species: Agrobacterium tumefaciens [TaxId:358]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8UB77 (0-302)
  - cloning artifact (1)
  - microheterogeneity (165)
Domains in SCOPe 2.07: d4ur7a_
Chain 'B':
Compound: keto-deoxy-d-galactarate dehydratase
Species: Agrobacterium tumefaciens [TaxId:358]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8UB77 (0-302)
  - cloning artifact (1)
  - microheterogeneity (165)
  - expression tag (303-309)
Domains in SCOPe 2.07: d4ur7b1, d4ur7b2
Chain 'C':
Compound: keto-deoxy-d-galactarate dehydratase
Species: Agrobacterium tumefaciens [TaxId:358]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8UB77 (0-302)
  - cloning artifact (1)
  - microheterogeneity (165)
  - expression tag (303-306)
Domains in SCOPe 2.07: d4ur7c1, d4ur7c2
Chain 'D':
Compound: keto-deoxy-d-galactarate dehydratase
Species: Agrobacterium tumefaciens [TaxId:358]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8UB77 (0-End)
  - cloning artifact (1)
  - microheterogeneity (165)
Domains in SCOPe 2.07: d4ur7d_
Heterogens: GOL, FMT, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4ur7A (A:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
rkawshpqfek

Sequence, based on observed residues (ATOM records): (download)

>4ur7A (A:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
rka

Chain 'B':
Sequence, based on SEQRES records: (download)

>4ur7B (B:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
rkawshpqfek

Sequence, based on observed residues (ATOM records): (download)

>4ur7B (B:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
rkawshpqfe

Chain 'C':
Sequence, based on SEQRES records: (download)

>4ur7C (C:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
rkawshpqfek

Sequence, based on observed residues (ATOM records): (download)

>4ur7C (C:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
rkawshp

Chain 'D':
Sequence, based on SEQRES records: (download)

>4ur7D (D:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
rkawshpqfek

Sequence, based on observed residues (ATOM records): (download)

>4ur7D (D:)
mdpeqiktalgsgllsfpvthfdaegrfaadsyrehvewlagykapvlfaaggtgeffsl
kpdeiptivaaakevagetaivsgcgygteiavdiarsvekvgadgilllphylidapqe
glyahikkvcqsvgigvmvynrdnsvlqadtlarlcdecpnlvgfxdgtgdiglvrqita
kmgdrlmylggmptaelfaeaylgagfttyssavfnfvpglanefyaalrageratceri
lvdffypfmairnrakgyavsavkagvrlqgfnagpvraplkdltneeigmlealigthk
r