PDB entry 4udt

View 4udt on RCSB PDB site
Description: T cell receptor (TRAV22,TRBV7-9) structure
Class: immune system
Keywords: immune system, superantigen, staphylcococcal enterotoxin, t cell receptor, major histocompatibility complex
Deposited on 2014-12-11, released 2015-06-24
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-06-24, with a file datestamp of 2015-06-19.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: N/A
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: t cell receptor alpha chain, T-cell receptor alpha chain c region
    Species: HOMO SAPIENS, HOMO SAPIENS [TaxId:9606, 9606]
    Gene: TRAC, TCRA
    Database cross-references and differences (RAF-indexed):
    • PDB 4UDT (Start-111)
      • engineered mutation (159)
    • Uniprot P01848 (112-End)
    Domains in SCOPe 2.05: d4udta1, d4udta2
  • Chain 'B':
    Compound: protein trbv7-9, T-cell receptor beta-2 chain c region
    Species: HOMO SAPIENS, HOMO SAPIENS [TaxId:9606, 9606]
    Gene: TCRBV6S4A1, TRBV7-9, TRBC2, TCRBC2
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A5A3 (Start-96)
      • linker (97-113)
      • engineered mutation (127)
      • engineered mutation (169)
      • engineered mutation (187)
      • engineered mutation (201)
    • Uniprot A0A5B9 (114-242)
    Domains in SCOPe 2.05: d4udtb1, d4udtb2
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4udtA (A:)
mgiqveqsppdlilqeganstlrcnfsdsvnnlqwfhqnpwgqlinlfyipsgtkqngrl
sattvaterysllyisssqttdsgvyfcavdsatsgtykyifgtgtrlkvlaniqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
sdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records): (download) 
    >4udtA (A:)
giqveqsppdlilqeganstlrcnfsdsvnnlqwfhqnpwgqlinlfyipsgtkqngrls
attvaterysllyisssqttdsgvyfcavdsatsgtykyifgtgtrlkvlaniqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnnsiipedtffpsp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4udtB (B:)
mdtgvsqnprhkitkrgqnvtfrcdpisehnrlywyrqtlgqgpefltyfqneaqleksr
llsdrfsaerpkgsfstleiqrteqgdsamylcasslggyeqyfgpgtrltvtedlknvf
ppevavfvpseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqp
alndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
rad

    Sequence, based on observed residues (ATOM records): (download) 
    >4udtB (B:)
tgvsqnprhkitkrgqnvtfrcdpisehnrlywyrqtlgqgpefltyfqneaqleksrll
sdrfsaerpkgsfstleiqrteqgdsamylcasslggyeqyfgpgtrltvtedlknvfpp
evavfvpseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpal
ndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra
d