PDB entry 4nt0
View 4nt0 on RCSB PDB site
Description: Crystal structure of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 3-deazauridine 5'-monophosphate
Class: lyase
Keywords: tim-barrel, orotidine 5'-monophosphate decarboxylase, 3-deazauridine 5'-monophosphate, LYASE
Deposited on
2013-11-29, released
2013-12-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2013-12-18, with a file datestamp of
2013-12-13.
Experiment type: XRAY
Resolution: 1.77 Å
R-factor: 0.196
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: orotidine 5'-phosphate decarboxylase
Species: Methanothermobacter thermautotrophicus [TaxId:145262]
Gene: pyrF, MTH_129
Database cross-references and differences (RAF-indexed):
- Uniprot O26232
- engineered mutation (100)
Domains in SCOPe 2.08: d4nt0a_ - Chain 'B':
Compound: orotidine 5'-phosphate decarboxylase
Species: Methanothermobacter thermautotrophicus [TaxId:145262]
Gene: pyrF, MTH_129
Database cross-references and differences (RAF-indexed):
- Uniprot O26232
- engineered mutation (100)
Domains in SCOPe 2.08: d4nt0b_ - Heterogens: 3DU, CA, PEG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4nt0A (A:)
mrsrrvdvmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefr
krfgcriiadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrev
flltemshpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflisp
gvgaqggdpgetlrfadaiivgrsiyladnpaaaaagiiesikdllnp
Sequence, based on observed residues (ATOM records): (download)
>4nt0A (A:)
rsrrvdvmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefrk
rfgcriiadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrevf
lltemshpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflispg
etlrfadaiivgrsiyladnpaaaaagiiesik
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4nt0B (B:)
mrsrrvdvmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefr
krfgcriiadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrev
flltemshpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflisp
gvgaqggdpgetlrfadaiivgrsiyladnpaaaaagiiesikdllnp
Sequence, based on observed residues (ATOM records): (download)
>4nt0B (B:)
rsrrvdvmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefrk
rfgcriiadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrevf
lltemshpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflispg
etlrfadaiivgrsiyladnpaaaaagiiesik