PDB entry 4lgp

View 4lgp on RCSB PDB site
Description: Ricin A chain bound to camelid nanobody (VHH1)
Class: hydrolase/immune system
Keywords: Ribosome inhibiting protein 2, Camelid antibody (VHH), HYDROLASE-IMMUNE SYSTEM complex
Deposited on 2013-06-28, released 2014-06-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ricin
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lgpa_
  • Chain 'B':
    Compound: VHH1 camelid nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LGP (0-115)
    Domains in SCOPe 2.08: d4lgpb_
  • Chain 'C':
    Compound: ricin
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lgpc_
  • Chain 'D':
    Compound: VHH1 camelid nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LGP (Start-115)
    Domains in SCOPe 2.08: d4lgpd_
  • Heterogens: CL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4lgpA (A:)
ifpkqypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilv
elsnhaelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafg
gnydrleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaar
fqyiegemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskf
svydvsilipiialmvyrcap

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4lgpB (B:)
qvqlvetggglvqpggsltlscagsggtlehyaigwfrqapgkehewlvcnrgeygstvy
vdsvkgrftasrdnakntvylqlnslkpddtgiyycvsgcyswrgpwgqgtqvtvs

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4lgpC (C:)
ifpkqypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilv
elsnhaelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafg
gnydrleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaar
fqyiegemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskf
svydvsilipiialmvyrcap

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4lgpD (D:)
qvqlvetggglvqpggsltlscagsggtlehyaigwfrqapgkehewlvcnrgeygstvy
vdsvkgrftasrdnakntvylqlnslkpddtgiyycvsgcyswrgpwgqgtqvtvs

    Sequence, based on observed residues (ATOM records): (download) 
    >4lgpD (D:)
vqlvetggglvqpggsltlscagsggtlehyaigwfrqapgkehewlvcnrgeygstvyv
dsvkgrftasrdnakntvylqlnslkpddtgiyycvsgcyswrgpwgqgtqvtvs