SCOPe 2.08: Structural Classification of Proteins

PDB entry 4kod

View 4kod on RCSB PDB site
Description: Structure of p97 N-D1 R155H mutant in complex with ADP
Class: hydrolase
Keywords: AAA ATPase, Transport protein, HYDROLASE
Deposited on 2013-05-11, released 2013-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-01-08, with a file datestamp of 2014-01-03.
Experiment type: XRAY
Resolution: 2.96 Å
R-factor: 0.27
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4koda1, d4koda2, d4koda3
Chain 'B':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodb1, d4kodb2, d4kodb3
Chain 'C':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodc1, d4kodc2, d4kodc3
Chain 'D':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodd1, d4kodd2, d4kodd3
Chain 'E':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kode1, d4kode2, d4kode3
Chain 'F':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodf1, d4kodf2, d4kodf3
Chain 'G':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodg1, d4kodg2, d4kodg3
Chain 'H':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodh1, d4kodh2, d4kodh3
Chain 'I':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodi1, d4kodi2, d4kodi3
Chain 'J':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodj1, d4kodj2, d4kodj3
Chain 'K':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodk1, d4kodk2, d4kodk3
Chain 'L':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: P97, VCP
Database cross-references and differences (RAF-indexed):
- Uniprot P55072
  - engineered mutation (154)
Domains in SCOPe 2.08: d4kodl1, d4kodl2, d4kodl3
Heterogens: ADP, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4kodA (A:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvhggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
grshhhhhh