PDB entry 4kl8

View 4kl8 on RCSB PDB site
Description: High-resolution structure of anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air
Class: oxidoreductase
Keywords: O2-resistance, H2-cleavage and production, SELENINATE, OXIDOREDUCTASE
Deposited on 2013-05-07, released 2013-07-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 1.52 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Nickel-dependent hydrogenase large subunit
    Species: Desulfomicrobium baculatum [TaxId:525897]
    Database cross-references and differences (RAF-indexed):
    • Uniprot C7LN88 (Start-498)
      • see remark 999 (492)
    Domains in SCOPe 2.08: d4kl8l_
  • Chain 'M':
    Compound: Nickel-dependent hydrogenase large subunit
    Species: Desulfomicrobium baculatum [TaxId:525897]
    Database cross-references and differences (RAF-indexed):
    • Uniprot C7LN88 (Start-498)
      • see remark 999 (492)
    Domains in SCOPe 2.08: d4kl8m_
  • Chain 'S':
    Compound: Periplasmic [NiFeSe] hydrogenase small subunit
    Species: Desulfomicrobium baculatum [TaxId:899]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kl8s_
  • Chain 'T':
    Compound: Periplasmic [NiFeSe] hydrogenase small subunit
    Species: Desulfomicrobium baculatum [TaxId:899]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kl8t_
  • Heterogens: SF4, CA, CL, GOL, FCO, NI, H2S, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4kl8L (L:)
msqaatpaadgkvkisidpltrveghlkievevkdgkvvdakcsggmfrgfeqilrgrdp
rdssqivqricgvcptahctasvmaqddafgvkvttngritrnlifganylqshilhfyh
laaldyvkgpdvspfvpryanadlltdrikdgakadatntyglnqylkaleirrichemv
amfggrmphvqgmvvggateiptadkvaeyaarfkevqkfvieeylpliytlgsvytdlf
etgigwknviafgvfpedddyktfllkpgvyidgkdeefdsklvkeyvghsffdhsapgg
lhysvgetnpnpdkpgaysfvkaprykdkpcevgplarmwvqnpelspvgqkllkelygi
eaknfrdlgdkafsimgrhvaraeetwltavavekwlkqvqpgaetyvkseipdaaegtg
fteaprgallhylkikdkkienyqivsatlwnanprddmgqrgpieealigvpvpdiknp
vnvgrlvrsydpxlgcavh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kl8L (L:)
gkvkisidpltrveghlkievevkdgkvvdakcsggmfrgfeqilrgrdprdssqivqri
cgvcptahctasvmaqddafgvkvttngritrnlifganylqshilhfyhlaaldyvkgp
dvspfvpryanadlltdrikdgakadatntyglnqylkaleirrichemvamfggrmphv
qgmvvggateiptadkvaeyaarfkevqkfvieeylpliytlgsvytdlfetgigwknvi
afgvfpedddyktfllkpgvyidgkdeefdsklvkeyvghsffdhsapgglhysvgetnp
npdkpgaysfvkaprykdkpcevgplarmwvqnpelspvgqkllkelygieaknfrdlgd
kafsimgrhvaraeetwltavavekwlkqvqpgaetyvkseipdaaegtgfteaprgall
hylkikdkkienyqivsatlwnanprddmgqrgpieealigvpvpdiknpvnvgrlvrsy
dpxlgcavh

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >4kl8M (M:)
msqaatpaadgkvkisidpltrveghlkievevkdgkvvdakcsggmfrgfeqilrgrdp
rdssqivqricgvcptahctasvmaqddafgvkvttngritrnlifganylqshilhfyh
laaldyvkgpdvspfvpryanadlltdrikdgakadatntyglnqylkaleirrichemv
amfggrmphvqgmvvggateiptadkvaeyaarfkevqkfvieeylpliytlgsvytdlf
etgigwknviafgvfpedddyktfllkpgvyidgkdeefdsklvkeyvghsffdhsapgg
lhysvgetnpnpdkpgaysfvkaprykdkpcevgplarmwvqnpelspvgqkllkelygi
eaknfrdlgdkafsimgrhvaraeetwltavavekwlkqvqpgaetyvkseipdaaegtg
fteaprgallhylkikdkkienyqivsatlwnanprddmgqrgpieealigvpvpdiknp
vnvgrlvrsydpxlgcavh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kl8M (M:)
gkvkisidpltrveghlkievevkdgkvvdakcsggmfrgfeqilrgrdprdssqivqri
cgvcptahctasvmaqddafgvkvttngritrnlifganylqshilhfyhlaaldyvkgp
dvspfvpryanadlltdrikdgakadatntyglnqylkaleirrichemvamfggrmphv
qgmvvggateiptadkvaeyaarfkevqkfvieeylpliytlgsvytdlfetgigwknvi
afgvfpedddyktfllkpgvyidgkdeefdsklvkeyvghsffdhsapgglhysvgetnp
npdkpgaysfvkaprykdkpcevgplarmwvqnpelspvgqkllkelygieaknfrdlgd
kafsimgrhvaraeetwltavavekwlkqvqpgaetyvkseipdaaegtgfteaprgall
hylkikdkkienyqivsatlwnanprddmgqrgpieealigvpvpdiknpvnvgrlvrsy
dpxlgcavh

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >4kl8S (S:)
mtegakkapviwvqgqgctgcsvsllnavhprikeilldvislefhptvmasegemalah
myeiaekfngnffllvegaiptakegrycivgetldakghhhevtmmelirdlapkslat
vavgtcsayggipaaegnvtgsksvrdffadekiekllvnvpgcpphpdwmvgtlvaaws
hvlnptehplpeldddgrpllffgdnihencpyldkydnsefaetftkpgckaelgckgp
styadcakrrwnnginwcvenavcigcvepdfpdgkspfyvae

    Sequence, based on observed residues (ATOM records): (download) 
    >4kl8S (S:)
akkapviwvqgqgctgcsvsllnavhprikeilldvislefhptvmasegemalahmyei
aekfngnffllvegaiptakegrycivgetldakghhhevtmmelirdlapkslatvavg
tcsayggipaaegnvtgsksvrdffadekiekllvnvpgcpphpdwmvgtlvaawshvln
ptehplpeldddgrpllffgdnihencpyldkydnsefaetftkpgckaelgckgpstya
dcakrrwnnginwcvenavcigcvepdfpdgkspfyvae

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >4kl8T (T:)
mtegakkapviwvqgqgctgcsvsllnavhprikeilldvislefhptvmasegemalah
myeiaekfngnffllvegaiptakegrycivgetldakghhhevtmmelirdlapkslat
vavgtcsayggipaaegnvtgsksvrdffadekiekllvnvpgcpphpdwmvgtlvaaws
hvlnptehplpeldddgrpllffgdnihencpyldkydnsefaetftkpgckaelgckgp
styadcakrrwnnginwcvenavcigcvepdfpdgkspfyvae

    Sequence, based on observed residues (ATOM records): (download) 
    >4kl8T (T:)
akkapviwvqgqgctgcsvsllnavhprikeilldvislefhptvmasegemalahmyei
aekfngnffllvegaiptakegrycivgetldakghhhevtmmelirdlapkslatvavg
tcsayggipaaegnvtgsksvrdffadekiekllvnvpgcpphpdwmvgtlvaawshvln
ptehplpeldddgrpllffgdnihencpyldkydnsefaetftkpgckaelgckgpstya
dcakrrwnnginwcvenavcigcvepdfpdgkspfyvae