PDB entry 4kb3

View 4kb3 on RCSB PDB site
Description: Crystal structure of the mitochondrial peroxiredoxin from Leishmania braziliensis in the decameric form
Class: oxidoreductase
Keywords: Thioredoxin-like, Oxidoreductase, mitochondria
Deposited on 2013-04-23, released 2014-05-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-05-14, with a file datestamp of 2014-05-09.
Experiment type: XRAY
Resolution: 2.93 Å
R-factor: 0.234
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3a_
  • Chain 'B':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3b_
  • Chain 'C':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3d_
  • Chain 'E':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3e_
  • Chain 'F':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3f_
  • Chain 'G':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3g_
  • Chain 'H':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3h_
  • Chain 'I':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3i_
  • Chain 'J':
    Compound: Peroxidoxin
    Species: Leishmania braziliensis [TaxId:5660]
    Gene: LBRM_23_0050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb3j_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4kb3A (A:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3A (A:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyaden

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4kb3B (B:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3B (B:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipc

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4kb3D (D:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3D (D:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipc

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4kb3E (E:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3E (E:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyaden

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4kb3F (F:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3F (F:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyaden

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4kb3G (G:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3G (G:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyaden

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4kb3H (H:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3H (H:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadenaipcgw

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4kb3I (I:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3I (I:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyaden

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4kb3J (J:)
rtatvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdryl
efeklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesag
ialrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyadengdaipcgwtpgkptl
dtkkageffekn

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb3J (J:)
atvrdpapqfsgkavvdgaikeinsndykgkyivlffypmdftfvcpteiiafsdrylef
eklntqviavscdseyshlawvntprkkgglgemkipvladksmeiardygvliesagia
lrglfvidkkgtlrhstindlpvgrnvdevlrvveafqyaden