PDB entry 4il0

View 4il0 on RCSB PDB site
Description: Crystal structure of GlucDRP from E. coli K-12 MG1655 (EFI target EFI-506058)
Class: lyase
Keywords: TIM-barrel, dehydratase, GlucD, LYASE
Deposited on 2012-12-28, released 2013-01-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-01-16, with a file datestamp of 2013-01-11.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.176
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0a1, d4il0a2
  • Chain 'B':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0b1, d4il0b2
  • Chain 'C':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0c1, d4il0c2
  • Chain 'D':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0d1, d4il0d2
  • Chain 'E':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0e1, d4il0e2
  • Chain 'F':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0f1, d4il0f2
  • Chain 'G':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0g1, d4il0g2
  • Chain 'H':
    Compound: Glucarate dehydratase-related protein
    Species: Escherichia coli [TaxId:511145]
    Gene: gudX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4il0h1, d4il0h2
  • Heterogens: CIT, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4il0A (A:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0A (A:)
spvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlv
daipmvlgqevarlnkvvqqvhkgnqaadfdtfgkgawtfelrvnavaaleaalldllgk
alnvpvcellgpgkqreaitvlgylfyigdrtktdlpyventpgnhewyqlrhqkamnse
avvrlaeasqdrygfkdfklkggvlpgeqeidtvralkkrfpdaritvdpngawlldeai
slckglndvltyaedpcgaeqgfsgrevmaefrratglpvatnmiatnwremghavmlna
vdipladphfwtlsgavrvaqlcddwgltwgchsnnhfdislamfthvgaaapgnptaid
thwiwqegdcrltqnpleikngkiavpdapglgveldweqvqkaheaykrlpggarndag
pmqylipgwtfdrkrpvfgr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4il0B (B:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0B (B:)
spvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlv
daipmvlgqevarlnkvvqqvhkgnqaadfdtfgkgawtfelrvnavaaleaalldllgk
alnvpvcellgpgkqreaitvlgylfyigdrtktdlpyventpgnhewyqlrhqkamnse
avvrlaeasqdrygfkdfklkggvlpgeqeidtvralkkrfpdaritvdpngawlldeai
slckglndvltyaedpcgaeqgfsgrevmaefrratglpvatnmiatnwremghavmlna
vdipladphfwtlsgavrvaqlcddwgltwgchsnnhfdislamfthvgaaapgnptaid
thwiwqegdcrltqnpleikngkiavpdapglgveldweqvqkaheaykrlpggarndag
pmqylipgwtfdrkrpvfgr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4il0C (C:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0C (C:)
spvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlv
daipmvlgqevarlnkvvqqvhkgnqaadfdtfgkgawtfelrvnavaaleaalldllgk
alnvpvcellgpgkqreaitvlgylfyigdrtktdlpyventpgnhewyqlrhqkamnse
avvrlaeasqdrygfkdfklkggvlpgeqeidtvralkkrfpdaritvdpngawlldeai
slckglndvltyaedpcgaeqgfsgrevmaefrratglpvatnmiatnwremghavmlna
vdipladphfwtlsgavrvaqlcddwgltwgchsnnhfdislamfthvgaaapgnptaid
thwiwqegdcrltqnpleikngkiavpdapglgveldweqvqkaheaykrlpggarndag
pmqylipgwtfdrkrpvfgr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4il0D (D:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0D (D:)
spvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlv
daipmvlgqevarlnkvvqqvhtfelrvnavaaleaalldllgkalnvpvcellgpgkqr
eaitvlgylfyigdrtktdlpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfk
dfklkggvlpgeqeidtvralkkrfpdaritvdpngawlldeaislckglndvltyaedp
cgaeqgfsgrevmaefrratglpvatnmiatnwremghavmlnavdipladphfwtlsga
vrvaqlcddwgltwgchsnnhfdislamfthvgaaapgnptaidthwiwqegdcrltqnp
leikngkiavpdapglgveldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrp
vfgr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4il0E (E:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0E (E:)
spvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlv
daipmvlgqevarlnkvvqqvhlrvnavaaleaalldllgkalnvpvcellgpgkqreai
tvlgylfyigdrtktdlpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfk
lkggvlpgeqeidtvralkkrfpdaritvdpngawlldeaislckglndvltyaedpcga
eqgfsgrevmaefrratglpvatnmiatnwremghavmlnavdipladphfwtlsgavrv
aqlcddwgltwgchsnnhfdislamfthvgaaapgnptaidthwiwqegdcrltqnplei
kngkiavpdapglgveldweqvqkaheaykrlpndagpmqylipgwtfdrkrpvfgr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4il0F (F:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0F (F:)
pvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlvd
aipmvlgqevarlnkvvqqvhkgnqaadfdtfgkgawtfelrvnavaaleaalldllgka
lnvpvcellgpgkqreaitvlgylfyigdrtktdlpyventpgnhewyqlrhqkamnsea
vvrlaeasqdrygfkdfklkggvlpgeqeidtvralkkrfpdaritvdpngawlldeais
lckglndvltyaedpcgaeqgfsgrevmaefrratglpvatnmiatnwremghavmlnav
dipladphfwtlsgavrvaqlcddwgltwgchsnnhfdislamfthvgaaapgnptaidt
hwiwqegdcrltqnpleikngkiavpdapglgveldweqvqkaheaykrlpggarndagp
mqylipgwtfdrkrpvfgr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4il0G (G:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0G (G:)
pvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlvd
aipmvlgqevarlnkvvqqvhvnavaaleaalldllgkalnvpvcellgpgkqreaitvl
gylfyigdrtktdlpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkg
gvlpgeqeidtvralkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqg
fsgrevmaefrratglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaql
cddwgltwgchsnnhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikng
kiavpdapglgveldweqvqkaheaykrlparndagpmqylipgwtfdrkrpvfgr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4il0H (H:)
mgsshhhhhhssglvprgshmatqsspvitdmkvipvaghdsmllniggahnayftrniv
vltdnaghtgigeapggdviyqtlvdaipmvlgqevarlnkvvqqvhkgnqaadfdtfgk
gawtfelrvnavaaleaalldllgkalnvpvcellgpgkqreaitvlgylfyigdrtktd
lpyventpgnhewyqlrhqkamnseavvrlaeasqdrygfkdfklkggvlpgeqeidtvr
alkkrfpdaritvdpngawlldeaislckglndvltyaedpcgaeqgfsgrevmaefrra
tglpvatnmiatnwremghavmlnavdipladphfwtlsgavrvaqlcddwgltwgchsn
nhfdislamfthvgaaapgnptaidthwiwqegdcrltqnpleikngkiavpdapglgve
ldweqvqkaheaykrlpggarndagpmqylipgwtfdrkrpvfgrh

    Sequence, based on observed residues (ATOM records): (download) 
    >4il0H (H:)
spvitdmkvipvaghdsmllniggahnayftrnivvltdnaghtgigeapggdviyqtlv
daipmvlgqevarlnkvvqqvhkgnqaadfdtfgkgawtfelrvnavaaleaalldllgk
alnvpvcellgpgkqreaitvlgylfyigdrtgnhewyqlrhqkamnseavvrlaeasqd
rygfkdfklkggvlpgeqeidtvralkkrfpdaritvdpngawlldeaislckglndvlt
yaedpcgaeqgfsgrevmaefrratglpvatnmiatnwremghavmlnavdipladphfw
tlsgavrvaqlcddwgltwgchsnnhfdislamfthvgaaapgnptaidthwiwqegdcr
ltleikngkiavpdapglgveldweqvqkaheaykrlpggarndagpmqylipgwtfdrk
rpvfgr