PDB entry 4ii3

View 4ii3 on RCSB PDB site
Description: Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg
Class: ligase
Keywords: Rossmann-like Fold, ubiquitin-like fold, Ubiquitin activating enzyme activity, ATP binding, Ligase activity, ATP/Mg binding, Ubiquitin E2 binding, LIGASE
Deposited on 2012-12-19, released 2013-02-13
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-03-27, with a file datestamp of 2013-03-22.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.239
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Ubiquitin-activating enzyme E1 1
  Species: Schizosaccharomyces pombe [TaxId:284812]
  Gene: ptr3, SPBC1604.21c, SPBC211.09, Ubiquitin activating enzyme 1 (Uba1)
  Database cross-references and differences (RAF-indexed):
  • Uniprot O94609 (Start-1000)
• Chain 'B':
  Compound: ubiquitin-60s ribosomal protein l40
  Species: Schizosaccharomyces pombe [TaxId:284812]
  Gene: ubi2
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CH07 (20-95)
  Domains in SCOPe 2.05: d4ii3b_
• Chain 'C':
  Compound: Ubiquitin-activating enzyme E1 1
  Species: Schizosaccharomyces pombe [TaxId:284812]
  Gene: ptr3, SPBC1604.21c, SPBC211.09, Ubiquitin activating enzyme 1 (Uba1)
  Database cross-references and differences (RAF-indexed):
  • Uniprot O94609 (Start-1000)
• Chain 'D':
  Compound: ubiquitin-60s ribosomal protein l40
  Species: Schizosaccharomyces pombe [TaxId:284812]
  Gene: ubi2
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CH07 (20-95)
  Domains in SCOPe 2.05: d4ii3d_
• Heterogens: MG, ATP, CA, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence, based on SEQRES records: (download)
  

  >4ii3B (B:)
  mgsshhhhhhssglvprgshmqifvktltgktitlevessdtidnvkskiqdkegippdq
  qrlifagkqledgrtlsdyniqkestlhlvlrlrgg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >4ii3B (B:)
  mqifvktltgktitlevessdtidnvkskiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgg
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence, based on SEQRES records: (download)
  

  >4ii3D (D:)
  mgsshhhhhhssglvprgshmqifvktltgktitlevessdtidnvkskiqdkegippdq
  qrlifagkqledgrtlsdyniqkestlhlvlrlrgg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >4ii3D (D:)
  mqifvktltgktitlevessdtidnvkskiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgg