PDB entry 4grl
View 4grl on RCSB PDB site
Description: Crystal structure of a autoimmune TCR-MHC complex
Class: immune system
Keywords: immune complex, peptide antigen presentation, multiple sclerosis, autoimmunity, IMMUNE SYSTEM
Deposited on
2012-08-25, released
2013-11-06
The last revision prior to the SCOPe 2.07 freeze date was dated
2013-11-06, with a file datestamp of
2013-11-01.
Experiment type: XRAY
Resolution: 2.86 Å
R-factor: 0.204
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MHC class II HLA-DQ-alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: alpha chain, HLA-DQ1, HLA-DQA1, MHC CLASS II MOLECULE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4grla1, d4grla2 - Chain 'B':
Compound: MHC class II antigen
Species: Homo sapiens [TaxId:9606]
Gene: beta chain, HLA-DQ1, HLA-DQB1, MHC CLASS II MOLECULE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4grlb1, d4grlb2 - Chain 'C':
Compound: TCR Hy.1B11 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: TCR Hy.1B11 alpha chain
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4grlc1, d4grlc2 - Chain 'D':
Compound: TCR Hy.1B11 beta chain
Species: Homo sapiens [TaxId:9606]
Gene: TCR Hy.1B11 beta chain
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4grlA (A:)
divadhvascgvnlyqfygpsgqythefdgdeqfyvdlerketawrwpefskfggfdpqg
alrnmavakhnlnimikrynstaatnevpevtvfskspvtlgqpntliclvdnifppvvn
itwlsngqsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldqpllkhw
epe
Sequence, based on observed residues (ATOM records): (download)
>4grlA (A:)
divadhvascgvnlyqfygpsgqythefdgdeqfyvdlerketawrwpefskfggfdpqg
alrnmavakhnlnimikrynstaatnevpevtvfskspvtlgqpntliclvdnifppvvn
itwlsngqsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldqpllkhw
ep
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4grlB (B:)
egrdspedfvyqfkglcyftngtervrgvtrhiynreeyvrfdsdvgvyravtpqgrpva
eywnsqkevlegarasvdrvcrhnyevayrgilqrrveptvtispsrtealnhhnllics
vtdfypsqikvrwfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehp
slqspitvewraqsesaqsk
Sequence, based on observed residues (ATOM records): (download)
>4grlB (B:)
spedfvyqfkglcyftngtervrgvtrhiynreeyvrfdsdvgvyravtpqgrpvaeywn
sqkevlegarasvdrvcrhnyevayrgilqrrveptvtispsnllicsvtdfypsqikvr
wfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqspitvewra
q
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4grlC (C:)
mkgenveqhpstlsvqegdsavikctysdsasnyfpwykqelgkrpqliidirsnvgekk
dqriavtlnktakhfslhitetqpedsavyfcaassfgnekltfgtgtrltiipniqnpd
pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
nksdfacanafnnsiipedtffpspesss
Sequence, based on observed residues (ATOM records): (download)
>4grlC (C:)
enveqhpstlsvqegdsavikctysdsasnyfpwykqelgkrpqliidirsnvgekkdqr
iavtlnktakhfslhitetqpedsavyfcaassfgnekltfgtgtrltiipniqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnns
- Chain 'D':
No sequence available.