PDB entry 4eml

View 4eml on RCSB PDB site
Description: Synechocystis sp. PCC 6803 1,4-dihydroxy-2-naphthoyl-coenzyme A synthase (MenB) in complex with bicarbonate
Class: lyase
Keywords: 1,4-dihydroxy-2-naphthoyl-coenzyme A, synthase, LYASE
Deposited on 2012-04-12, released 2012-06-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-07-03, with a file datestamp of 2013-06-28.
Experiment type: XRAY
Resolution: 2.04 Å
R-factor: 0.167
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127, SYNGTS_0961
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4emla_
  • Chain 'B':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127, SYNGTS_0961
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4emlb_
  • Chain 'C':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127, SYNGTS_0961
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4emlc_
  • Chain 'D':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127, SYNGTS_0961
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4emld_
  • Chain 'E':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127, SYNGTS_0961
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4emle_
  • Chain 'F':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127, SYNGTS_0961
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4emlf_
  • Heterogens: BCT, MPD, CL, GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4emlA (A:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

    Sequence, based on observed residues (ATOM records): (download) 
    >4emlA (A:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsrlnvldlqrlirsmpkvvialvagyaiggghvlhlvcdlt
iaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqysaqeaermgmvntv
vpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqelagnatllyymteegs
egkqaflekrppdfsqypwlp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4emlB (B:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

    Sequence, based on observed residues (ATOM records): (download) 
    >4emlB (B:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdrlnvldlqrlirsmpkvvialvagyaiggghvlhlvcdltia
adnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqysaqeaermgmvntvvp
vdrleeegiqwakeilsksplairclkaafnadcdgqaglqelagnatllyymteegseg
kqaflekrppdfsqypwlp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4emlC (C:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

    Sequence, based on observed residues (ATOM records): (download) 
    >4emlC (C:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdrlnvldlqrlirsmpkvvialvagyaiggghvlhlvcdltia
adnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqysaqeaermgmvntvvp
vdrleeegiqwakeilsksplairclkaafnadcdgqaglqelagnatllyymteegseg
kqaflekrppdfsqypwlp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4emlD (D:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

    Sequence, based on observed residues (ATOM records): (download) 
    >4emlD (D:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdlnvldlqrlirsmpkvvialvagyaiggghvlhlvcdltiaa
dnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqysaqeaermgmvntvvpv
drleeegiqwakeilsksplairclkaafnadcdgqaglqelagnatllyymteegsegk
qaflekrppdfsqypwlp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4emlE (E:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

    Sequence, based on observed residues (ATOM records): (download) 
    >4emlE (E:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqlnvldlqrlirsmpkvvialvagyaiggghvlhlvcdltia
adnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqysaqeaermgmvntvvp
vdrleeegiqwakeilsksplairclkaafnadcdgqaglqelagnatllyymteegseg
kqaflekrppdfsqypwlp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4emlF (F:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

    Sequence, based on observed residues (ATOM records): (download) 
    >4emlF (F:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqlnvldlqrlirsmpkvvialvagyaiggghvlhlvcdltia
adnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqysaqeaermgmvntvvp
vdrleeegiqwakeilsksplairclkaafnadcdgqaglqelagnatllyymteegseg
kqaflekrppdfsqypwlp