SCOPe 2.06: Structural Classification of Proteins

PDB entry 3zds

View 3zds on RCSB PDB site
Description: Structure of homogentisate 1,2-dioxygenase in complex with reaction intermediates of homogentisate with oxygen.
Class: oxidoreductase
Keywords: oxidoreductase, extradiol, alkylperoxo species, homogentisate-semiquinone, ring-fission product
Deposited on 2012-11-30, released 2013-07-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-08-14, with a file datestamp of 2013-08-09.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.2055
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsa_
Chain 'B':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsb_
Chain 'C':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsc_
Chain 'D':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsd_
Chain 'E':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdse_
Chain 'F':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsf_
Chain 'G':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47
Domains in SCOPe 2.06: d3zdsg_
Chain 'H':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsh_
Chain 'I':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsi_
Chain 'J':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsj_
Chain 'K':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsk_
Chain 'L':
Compound: homogentisate 1,2-dioxygenase
Species: Pseudomonas putida [TaxId:160488]
Database cross-references and differences (RAF-indexed):
- Uniprot Q88E47 (Start-432)
Domains in SCOPe 2.06: d3zdsl_
Heterogens: FE, M8O, OMD, OXY, HQ9, PO4, HMQ, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3zdsA (A:)
mnrdtspdlhylsgfgnefasealpgalpvgqnspqkapyglyaellsgtaftmarselr
rtwlyrirpsalhprferlarqplggplgginpnrlrwspqpipaeptdfiegwlpmaan
agaekpagvsiyiyranrsmervffnadgelllvpeqgrlriatelgvmevepleiavip
rgmkfrvelldgqargyiaenhgaplrlpdlgpigsnglanprdfltpvahyeeaegpvq
lvqkflgehwacelqhspldvvawhgsnvpykydlrrfntigtvsfdhpdpsiftvltsp
tsvhgmanmdfvifpprwmvaentfrppwfhrnlmnefmglingaydakaegflpggasl
hgvmsahgpdaetcekaiaadlaphkidntmafmfetsqvlrpslqalecpqlqadydsc
watlpstfnpnrr