PDB entry 3wkj

View 3wkj on RCSB PDB site
Description: The nucleosome containing human TSH2B
Class: structural protein/DNA
Keywords: histone variant, histone-fold, DNA binding protein, STRUCTURAL PROTEIN-DNA complex
Deposited on 2013-10-22, released 2014-04-09
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-04-09, with a file datestamp of 2014-04-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.235
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Histone H3.1
    Species: Homo sapiens [TaxId:9606]
    Gene: H3.1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkja_
  • Chain 'B':
    Compound: histone h4
    Species: Homo sapiens [TaxId:9606]
    Gene: H4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkjb_
  • Chain 'C':
    Compound: Histone H2A type 1-B/E
    Species: Homo sapiens [TaxId:9606]
    Gene: H2A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkjc_
  • Chain 'D':
    Compound: Histone H2B type 1-A
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H2BA, TSH2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkjd_
  • Chain 'E':
    Compound: Histone H3.1
    Species: Homo sapiens [TaxId:9606]
    Gene: H3.1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkje_
  • Chain 'F':
    Compound: histone h4
    Species: Homo sapiens [TaxId:9606]
    Gene: H4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkjf_
  • Chain 'G':
    Compound: Histone H2A type 1-B/E
    Species: Homo sapiens [TaxId:9606]
    Gene: H2A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkjg_
  • Chain 'H':
    Compound: Histone H2B type 1-A
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H2BA, TSH2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3wkjh_
  • Chain 'I':
    Compound: DNA (145-mer)
    Species: Homo sapiens [TaxId:9606]
  • Chain 'J':
    Compound: DNA (145-mer)
    Species: Homo sapiens [TaxId:9606]
  • Heterogens: CL, MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3wkjA (A:)
gshmartkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqk
stellirklpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakr
vtimpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjA (A:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeace
aylvglfedtnlcaihakrvtimpkdiqlarrirger

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3wkjB (B:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjB (B:)
niqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtam
dvvyalkrqgrtlygfgg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3wkjC (C:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjC (C:)
akaktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaar
dnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3wkjD (D:)
gshmpevsskgatiskkgfkkavvktqkkegkkrkrtrkesysiyiykvlkqvhpdtgis
skamsimnsfvtdiferiaseasrlahyskrstissreiqtavrlllpgelakhavsegt
kavtkytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjD (D:)
trkesysiyiykvlkqvhpdtgisskamsimnsfvtdiferiaseasrlahyskrstiss
reiqtavrlllpgelakhavsegtkavtkytss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3wkjE (E:)
gshmartkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqk
stellirklpfqrlvreiaqdfktdlrfqssavmalqeaceaylvglfedtnlcaihakr
vtimpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjE (E:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeace
aylvglfedtnlcaihakrvtimpkdiqlarrirgera

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3wkjF (F:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjF (F:)
rkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakr
ktvtamdvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3wkjG (G:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjG (G:)
ktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnk
ktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3wkjH (H:)
gshmpevsskgatiskkgfkkavvktqkkegkkrkrtrkesysiyiykvlkqvhpdtgis
skamsimnsfvtdiferiaseasrlahyskrstissreiqtavrlllpgelakhavsegt
kavtkytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkjH (H:)
rkesysiyiykvlkqvhpdtgisskamsimnsfvtdiferiaseasrlahyskrstissr
eiqtavrlllpgelakhavsegtkavtkytss

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.