PDB entry 3vvk

View 3vvk on RCSB PDB site
Description: An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin
Class: membrane protein
Keywords: seven-transmembrane-retinylidene protein, chloride-bound purple form, light-driven chloride ion pump, azide-bound purple form, light-driven proton pump, MEMBRANE PROTEIN
Deposited on 2012-07-26, released 2013-06-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis [TaxId:2257]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3vvka_
  • Chain 'B':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis [TaxId:2257]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3vvkb_
  • Chain 'C':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis [TaxId:2257]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3vvkc_
  • Chain 'D':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis [TaxId:2257]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3vvkd_
  • Chain 'E':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis [TaxId:2257]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3vvke_
  • Chain 'F':
    Compound: halorhodopsin
    Species: Natronomonas pharaonis [TaxId:2257]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3vvkf_
  • Heterogens: RET, BNG, 22B, L3P, AZI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vvkA (A:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvkA (A:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsgsi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3vvkB (B:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvkB (B:)
vtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvvs
iasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmillal
gllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillvew
aqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivakyi
faflllnyltsnegvvsg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3vvkC (C:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvkC (C:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3vvkD (D:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvkD (D:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsgs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3vvkE (E:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvkE (E:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3vvkF (F:)
mtetlppvtesavalqaevtqrelfefvlndpllasslyinialaglsillfvfmtrgld
dprakliavstilvpvvsiasytglasgltisvlempaghfaegssvmlggeevdgvvtm
wgryltwalstpmillalgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwy
aiscacfivvlyillvewaqdakaagtadifstlklltvvmwlgypivwalgvegvavlp
vgytswaysaldivakyifaflllnyltsnegvvsgsildvpsasgapadd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvkF (F:)
evtqrelfefvlndpllasslyinialaglsillfvfmtrglddprakliavstilvpvv
siasytglasgltisvlempaghfaegssvmlggeevdgvvtmwgryltwalstpmilla
lgllagsnatklftaitfdiamcvtglaaalttsshlmrwfwyaiscacfivvlyillve
waqdakaagtadifstlklltvvmwlgypivwalgvegvavlpvgytswaysaldivaky
ifaflllnyltsnegvvsg