PDB entry 3obt

View 3obt on RCSB PDB site
Description: Crystal structure of Botulinum neurotoxin serotype D ligand binding domain in complex with N-Acetylneuraminic acid
Class: hydrolase
Keywords: neurotoxin, gangalioside, HYDROLASE
Deposited on 2010-08-09, released 2010-09-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Botulinum neurotoxin type D
    Species: Clostridium botulinum [TaxId:1491]
    Gene: BOTD
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19321 (7-420)
      • expression tag (3-6)
      • expression tag (421-422)
    Domains in SCOPe 2.07: d3obta1, d3obta2, d3obta3, d3obta4
  • Heterogens: SLB, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3obtA (A:)
mrgsamasindskilslqnkknalvdtsgynaevrvgdnvqlntiytndfklsssgdkii
vnlnnnilysaiyenssvsfwikiskdltnshneytiinsieqnsgwklcirngniewil
qdvnrkykslifdyseslshtgytnkwffvtitnnimgymklyingelkqsqkiedldev
kldktivfgidenidenqmlwirdfnifskelsnedinivyegqilrnvikdywgnplkf
dteyyiindnyidryiapesnvlvlvqypdrsklytgnpitiksvsdknpysrilngdni
ilhmlynsrkymiirdtdtiyatqggecsqncvyalklqsnlgnygigifsiknivsknk
ycsqifssfrentmlladiykpwrfsfknaytpvavtnyetkllstssfwkfisrdpgwv
epptpgwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3obtA (A:)
samasindskilslqnkknalvdtsgynaevrvgdnvqlntiytndfklsssgdkiivnl
nnnsaiyenssvsfwikiskdltnshneytiinsieqnsgwklcirngniewilqdvnrk
ykslifdyseslshtgytnkwffvtitnnimgymklyingelkqsqkiedldevkldkti
vfgidenidenqmlwirdfnifskelsnedinivyegqilrnvikdywgnplkfdteyyi
indnyidryiapesnvlvlvqypdrsklytgnpitiksvsdknpysrilngdniilhmly
nsrkymiirdtdtiyaecsqncvyalklqsnlgnygigifsiknivknkycsqifssfre
ntmlladiykpwrfsfknaytpvavtnyetkllstssfwkfisrdpgwvepp