PDB entry 3nh1

View 3nh1 on RCSB PDB site
Description: Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site
Class: hydrolase/DNA
Keywords: exoribonuclease, RNA processing, RNA maturation, protein-DNA interactions, protein-DNA complex, exo-nuclease, HYDROLASE-DNA complex
Deposited on 2010-06-14, released 2011-02-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-12-21, with a file datestamp of 2011-12-16.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: 0.175
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease T
    Species: Escherichia coli [TaxId:562]
    Gene: rnt
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nh1a_
  • Chain 'B':
    Compound: Ribonuclease T
    Species: Escherichia coli [TaxId:562]
    Gene: rnt
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nh1b_
  • Chain 'C':
    Compound: Ribonuclease T
    Species: Escherichia coli [TaxId:562]
    Gene: rnt
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nh1c_
  • Chain 'D':
    Compound: Ribonuclease T
    Species: Escherichia coli [TaxId:562]
    Gene: rnt
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nh1d_
  • Chain 'E':
    Compound: 5'-d(*tp*tp*ap*tp*ap*gp*g)-3'
  • Chain 'F':
    Compound: 5'-d(*tp*tp*ap*tp*ap*gp*g)-3'
  • Chain 'G':
    Compound: 5'-d(*tp*tp*ap*tp*ap*gp*g)-3'
  • Chain 'H':
    Compound: 5'-d(*tp*tp*ap*tp*ap*gp*g)-3'
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3nh1A (A:)
mgsshhhhhhssglvprgshmsdnaqltglcdrfrgfypvvidvetagfnaktdalleia
aitlkmdeqgwlmpdttlhfhvepfvganlqpealafngidpndpdrgavseyealheif
kvvrkgikasgcnraimvahnanfdhsfmmaaaeraslkrnpfhpfatfdtaalaglalg
qtvlskacqtagmdfdstqahsalydtertavlfceivnrwkrlggwplsaaeev

    Sequence, based on observed residues (ATOM records): (download) 
    >3nh1A (A:)
naqltglcdrfrgfypvvidvetagfnaktdalleiaaitlkmdeqgwlmpdttlhfhve
pfvganlqpealafngidpndpdrgavseyealheifkvvrkgikasgcnraimvahnan
fdhsfmmaaaeraslkrnpfhpfatfdtaalaglalgqtvlskacqtagmdfdstqahsa
lydtertavlfceivnrwkrlggwplsaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3nh1B (B:)
mgsshhhhhhssglvprgshmsdnaqltglcdrfrgfypvvidvetagfnaktdalleia
aitlkmdeqgwlmpdttlhfhvepfvganlqpealafngidpndpdrgavseyealheif
kvvrkgikasgcnraimvahnanfdhsfmmaaaeraslkrnpfhpfatfdtaalaglalg
qtvlskacqtagmdfdstqahsalydtertavlfceivnrwkrlggwplsaaeev

    Sequence, based on observed residues (ATOM records): (download) 
    >3nh1B (B:)
naqltglcdrfrgfypvvidvetagfnaktdalleiaaitlkmdeqgwlmpdttlhfhve
pfvganlqpealafngidpndpdrgavseyealheifkvvrkgikasgcnraimvahnan
fdhsfmmaaaeraslkrnpfhpfatfdtaalaglalgqtvlskacqtagmdfdstqahsa
lydtertavlfceivnrwkrlggwplsaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3nh1C (C:)
mgsshhhhhhssglvprgshmsdnaqltglcdrfrgfypvvidvetagfnaktdalleia
aitlkmdeqgwlmpdttlhfhvepfvganlqpealafngidpndpdrgavseyealheif
kvvrkgikasgcnraimvahnanfdhsfmmaaaeraslkrnpfhpfatfdtaalaglalg
qtvlskacqtagmdfdstqahsalydtertavlfceivnrwkrlggwplsaaeev

    Sequence, based on observed residues (ATOM records): (download) 
    >3nh1C (C:)
glcdrfrgfypvvidvetagfnaktdalleiaaitlkmdeqgwlmpdttlhfhvepfvga
nlqpealafngidpndpdrgavseyealheifkvvrkgikasgcnraimvahnanfdhsf
mmaaaeraslkrnpfhpfatfdtaalaglalgqtvlskacqtagmdfdstqahsalydte
rtavlfceivnrwkrlggwplsaa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3nh1D (D:)
mgsshhhhhhssglvprgshmsdnaqltglcdrfrgfypvvidvetagfnaktdalleia
aitlkmdeqgwlmpdttlhfhvepfvganlqpealafngidpndpdrgavseyealheif
kvvrkgikasgcnraimvahnanfdhsfmmaaaeraslkrnpfhpfatfdtaalaglalg
qtvlskacqtagmdfdstqahsalydtertavlfceivnrwkrlggwplsaaeev

    Sequence, based on observed residues (ATOM records): (download) 
    >3nh1D (D:)
glcdrfrgfypvvidvetagfnaktdalleiaaitlkmdeqgwlmpdttlhfhvepfvga
nlqpealafngidpndpdrgavseyealheifkvvrkgikasgcnraimvahnanfdhsf
mmaaaeraslkrnpfhpfatfdtaalaglalgqtvlskacqtagmdfdstqahsalydte
rtavlfceivnrwkrlggwplsaae

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.