PDB entry 3ldz
View 3ldz on RCSB PDB site
Description: Crystal structure of human STAM1 VHS domain in complex with ubiquitin
Class: protein transport
Keywords: ubiquitin-binding, Cytoplasm, Ubl conjugation, Endosome, Membrane, Protein transport, SH3 domain, Transport
Deposited on
2010-01-13, released
2010-03-02
The last revision prior to the SCOPe 2.02 freeze date was dated
2010-03-31, with a file datestamp of
2010-03-26.
Experiment type: XRAY
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Signal transducing adapter molecule 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ldza_ - Chain 'B':
Compound: Signal transducing adapter molecule 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ldzb_ - Chain 'C':
Compound: Signal transducing adapter molecule 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ldzc_ - Chain 'D':
Compound: Signal transducing adapter molecule 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ldzd_ - Chain 'E':
Compound: Ubiquitin
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ldze_ - Chain 'F':
Compound: Ubiquitin
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ldzf_ - Chain 'G':
Compound: Ubiquitin
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3ldzg_
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3ldzA (A:)
fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
qlslisamiknlkeqgvtfp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3ldzB (B:)
fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
qlslisamiknlkeqgvtfp
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3ldzC (C:)
fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
qlslisamiknlkeqgvtfp
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3ldzD (D:)
fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
qlslisamiknlkeqgvtfp
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3ldzE (E:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3ldzF (F:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>3ldzG (G:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl