PDB entry 3j3a
View 3j3a on RCSB PDB site
Description: Structure of the human 40S ribosomal proteins
Class: ribosome
Keywords: eukarya, eukaryotic, ribosomal, 80S, RNA, protein synthesis, mass spectrometry, RIBOSOME
Deposited on
2013-02-27, released
2013-05-01
The last revision prior to the SCOPe 2.08 freeze date was dated
2014-12-10, with a file datestamp of
2014-12-05.
Experiment type: EM
Resolution: 5 Å
R-factor: N/A
AEROSPACI score: -0.01
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 40S Ribosomal protein SA
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: 40s ribosomal protein s3a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: 40S ribosomal protein S2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: 40S ribosomal protein S3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: 40S ribosomal protein S4, X isoform
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: 40S ribosomal protein S5
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: 40s ribosomal protein s6
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: 40S ribosomal protein S7
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: 40s ribosomal protein s8
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: 40S ribosomal protein S9
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'K':
Compound: 40S ribosomal protein S10
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: 40S ribosomal protein S11
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: 40s ribosomal protein s12
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P25398 (Start-131)
- conflict (51)
- conflict (68)
- conflict (98)
- Chain 'N':
Compound: 40S ribosomal protein S13
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'O':
Compound: 40s ribosomal protein s14
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: 40S ribosomal protein S15
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: 40S ribosomal protein S16
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: 40S ribosomal protein S17
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'S':
Compound: 40S ribosomal protein S18
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: 40S ribosomal protein S19
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: 40S ribosomal protein S20
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'V':
Compound: 40S ribosomal protein S21
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'W':
Compound: 40S ribosomal protein S15a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'X':
Compound: 40S ribosomal protein S23
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'Y':
Compound: 40S ribosomal protein S24
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'Z':
Compound: 40S ribosomal protein S25
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'a':
Compound: 40S ribosomal protein S26
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3aa_ - Chain 'b':
Compound: 40S ribosomal protein S27
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3ab_ - Chain 'c':
Compound: 40S ribosomal protein S28
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3ac_ - Chain 'd':
Compound: 40S ribosomal protein S29
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3ad_ - Chain 'e':
Compound: 40S ribosomal protein S30
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3ae_ - Chain 'f':
Compound: 40S ribosomal protein S27a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3af_ - Chain 'g':
Compound: guanine nucleotide-binding protein subunit beta-2-like 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3ag_ - Chain 'h':
Compound: Plasminogen activator inhibitor 1 RNA-binding protein
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'z':
Compound: Elongation factor 2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3j3az1, d3j3az2, d3j3az3, d3j3az4, d3j3az5
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.
- Chain 'N':
No sequence available.
- Chain 'O':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.
- Chain 'R':
No sequence available.
- Chain 'S':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.
- Chain 'V':
No sequence available.
- Chain 'W':
No sequence available.
- Chain 'X':
No sequence available.
- Chain 'Y':
No sequence available.
- Chain 'Z':
No sequence available.
- Chain 'a':
Sequence, based on SEQRES records: (download)
>3j3aa (a:)
mtkkrrnngrakkgrghvqpirctncarcvpkdkaikkfvirniveaaavrdiseasvfd
ayvlpklyvklhycvscaihskvvrnrsrearkdrtppprfrpagaaprpppkpm
Sequence, based on observed residues (ATOM records): (download)
>3j3aa (a:)
tkkrrnngrakkgrghvqpirctncarcvpkdkaikkfvirniveaaavrdiseasvfda
yvlpklyvklhycvscaihskvvrnrsrearkdrtppprfrpagaap
- Chain 'b':
Sequence; same for both SEQRES and ATOM records: (download)
>3j3ab (b:)
mplakdllhpspeeekrkhkkkrlvqspnsyfmdvkcpgcykittvfshaqtvvlcvgcs
tvlcqptggkarltegcsfrrkqh
- Chain 'c':
Sequence, based on SEQRES records: (download)
>3j3ac (c:)
mdtsrvqpiklarvtkvlgrtgsqgqctqvrvefmddtsrsiirnvkgpvregdvltlle
serearrlr
Sequence, based on observed residues (ATOM records): (download)
>3j3ac (c:)
rvqpiklarvtkvlgrtgsqgqctqvrvefmddtsrsiirnvkgpvregdvltllesere
arrl
- Chain 'd':
Sequence, based on SEQRES records: (download)
>3j3ad (d:)
mghqqlywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfikld
Sequence, based on observed residues (ATOM records): (download)
>3j3ad (d:)
qqlywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfikld
- Chain 'e':
Sequence; same for both SEQRES and ATOM records: (download)
>3j3ae (e:)
kvhgslaragkvrgqtpkvakqekkkkktgrakrrmqynrrfvnvvptfgkkkgpnans
- Chain 'f':
Sequence, based on SEQRES records: (download)
>3j3af (f:)
akkrkkksyttpkknkhkrkkvklavlkyykvdengkisrlrrecpsdecgagvfmashf
drhycgkccltycfnkpedk
Sequence, based on observed residues (ATOM records): (download)
>3j3af (f:)
kksyttpkknkhkrkkvklavlkyykvdengkisrlrrecpsdecgagvfmashfdrhyc
gkccltycfnk
- Chain 'g':
Sequence, based on SEQRES records: (download)
>3j3ag (g:)
mteqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralr
ghshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqi
vsgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnla
ncklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalc
fspnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfa
gytdnlvrvwqvtigtr
Sequence, based on observed residues (ATOM records): (download)
>3j3ag (g:)
teqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralrg
hshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqiv
sgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnlan
cklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalcf
spnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfag
ytdnlvrvwqvti
- Chain 'h':
No sequence available.
- Chain 'z':
Sequence, based on SEQRES records: (download)
>3j3az (z:)
mvnftvdqiraimdkkanirnmsviahvdhgkstltdslvckagiiasaragetrftdtr
kdeqercitikstaislfyelsendlnfikqskdgagflinlidspghvdfssevtaalr
vtdgalvvvdcvsgvcvqtetvlrqaiaerikpvlmmnkmdrallelqlepeelyqtfqr
ivenvnviistygegesgpmgnimidpvlgtvgfgsglhgwaftlkqfaemyvakfaakg
egqlgpaerakkvedmmkklwgdryfdpangkfsksatspegkklprtfcqlildpifkv
fdaimnfkkeetakliekldikldsedkdkegkpllkavmrrwlpagdallqmitihlps
pvtaqkyrcellyegppddeaamgikscdpkgplmmyiskmvptsdkgrfyafgrvfsgl
vstglkvrimgpnytpgkkedlylkpiqrtilmmgryvepiedvpcgnivglvgvdqflv
ktgtittfehahnmrvmkfsvspvvrvaveaknpadlpklveglkrlaksdpmvqciiee
sgehiiagagelhleiclkdleedhacipikksdpvvsyretvseesnvlclskspnkhn
rlymkarpfpdglaedidkgevsarqelkqrarylaekyewdvaearkiwcfgpdgtgpn
iltditkgvqylneikdsvvagfqwatkegalceenmrgvrfdvhdvtlhadaihrgggq
iiptarrclyasvltaqprlmepiylveiqcpeqvvggiygvlnrkrghvfeesqvagtp
mfvvkaylpvnesfgftadlrsntggqafpqcvfdhwqilpgdpfdnssrpsqvvaetrk
rkglkegipaldnfldkl
Sequence, based on observed residues (ATOM records): (download)
>3j3az (z:)
nftvdqiraimdkkanirnmsviahvdhgkstltdslvckagiiasaragetrftdtrkd
eqercitikstaislfyelsendlnfikqskdgagflinlidspghvdfssevtaalrvt
dgalvvvdcvsgvcvqtetvlrqaiaerikpvlmmnkmdrallelqlepeelyqtfqriv
envnviistygegesgpmgnimidpvlgtvgfgsglhgwaftlkqfaemyvakfaakgeg
qlgpaerakkvedmmkklwgdryfdpangkfsksatspegkklprtfcqlildpifkvfd
aimnfkkeetakliekldikldsedkdkegkpllkavmrrwlpagdallqmitihlpspv
taqkyrcellyegppddeaamgikscdpkgplmmyiskmvptsdkgrfyafgrvfsglvs
tglkvrimgpnytpgkkedlylkpiqrtilmmgryvepiedvpcgnivglvgvdqflvkt
gtittfehahnmrvmkfsvspvvrvaveaknpadlpklveglkrlaksdpmvqciieesg
ehiiagagelhleiclkdleedhacipikksdpvvsyretvseesnvlclskspnkhnrl
ymkarpfpdglaedidkgevsarqelkqrarylaekyewdvaearkiwcfgpdgtgpnil
tditkgvqylneikdsvvagfqwatkegalceenmrgvrfdvhdvtlhadaihrgggqii
ptarrclyasvltaqprlmepiylveiqcpeqvvggiygvlnrkrghvfeesqvagtpmf
vvkaylpvnesfgftadlrsntggqafpqcvfdhwqilpgdpfdnssrpsqvvaetrkrk
glkegipaldnfldkl