PDB entry 3ibv

View 3ibv on RCSB PDB site
Description: Karyopherin cytosolic state
Class: RNA binding protein
Keywords: karyopherin, exportin, HEAT repeat, Cytoplasm, Nucleus, RNA-binding, Transport, tRNA processing, tRNA-binding, RNA BINDING PROTEIN
Deposited on 2009-07-17, released 2009-08-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-09-15, with a file datestamp of 2009-09-11.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.275
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exportin-T
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: los1, SPBP8B7.09c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ibva_
  • Chain 'B':
    Compound: Exportin-T
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: los1, SPBP8B7.09c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ibvb_
  • Heterogens: CA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ibvA (A:)
gpmsaqdvenaveaaldpsvgpiikqqatdfigslrssstgwkicheifsektkykpstr
liclqtlsekvrewnnesnllelqmirdsvwsyikelsfldepayisnavqhlltllflq
lypsnwndffaslqgviaassqsefsnfylkvllsigdeiadslvlktdvqiqkdnlvkd
airandmsdivsfvyemmlaysnaknygtvglclqvyaqwvswininlivnepcmnllys
flqieelrcaacetmteivnkkmkpleklnllnilnlnlffsksqeqstdpnfdehvakl
inaqgvelvaiksdpselspelkencsfqlynlfpylirylsddydetstavfpflsdll
vslrkessskelsaslkeflkslleaiikkmkydesqewdddpdseeeaefqemrkklki
fqdtinsidsslfssymysaitsslstaatlspenswqliefalyetyifgeglrgpdaf
fnevdksptvlsqilalvttsqvcrhphplvqllymeilvryasffdyesaaipalieyf
vgprgihntnervrprawylfyrfvksikkqvvnytesslamlgdllnisvspvtdmdap
vptlnssirnsdfnsqlylfetvgvlissgnltpeeqalycdslinaligkanaalssdl
saleniisvycslmaignfakgfpargseevawlasfnkasdeiflildrmgfnedirga
vrftsgriinvvgpdmlpkvpqlisillnsidmnelvdvlsfisqlihiykdnmmeitnr
mlptllmrifsslsaapqgtddavkqndlrksyisfilqllnkgfgsilfteenqvyfdp
linsilhfanlvgepatqkssialvskmvslwggkdgiagfenftlsltplcfempvnpn
fntrdgqslvvlgelaglqkiileklgdiyksylvtvyfptvnfpdvmaseylqalsnld
srsfkqffqkfiqalksgnv

    Sequence, based on observed residues (ATOM records): (download) 
    >3ibvA (A:)
msaqdvenaveaaldpsvgpiikqqatdfigslrssstgwkicheifsektkykpstrli
clqtlsekvrewnnesnllelqmirdsvwsyikelsfldepayisnavqhlltllflqly
psnwndffaslqgviaassqsefsnfylkvllsigdeiadslvlktdvqiqkdnlvkdai
randmsdivsfvyemmlaysnaknygtvglclqvyaqwvswininlivnepcmnllysfl
qieelrcaacetmteivnkkmkpleklnllnilnlnlffsktdpnfdehvaklinaqgve
lvaiksdpsspelkencsfqlynlfpylirylsddydetstavfpflsdllvslrkesss
kelsaslkeflkslleaiikkmkydesqewdddpdseeeaefqemrkklkifqdtinsid
sslfssymysaitsslstaatlspenswqliefalyetyifgeglrgpdaffnevdkspt
vlsqilalvttsqvcrhphplvqllymeilvryasffdyesaaipalieyfvgprgihnt
nervrprawylfyrfvksikkqvvnytesslamlgdllnisvspvtdapvptlnssirns
dfnsqlylfetvgvlissgnltpeeqalycdslinaligkanaalssdlseniisvycsl
maignfakgfpargeevawlasfnkasdeiflildrmgfnedirgavrftsgriinvvgp
dmlpkvpqlisillnsidmnelvdvlsfisqlihiykdnmmeitnrmlptllmrifssls
atddavkqndlrksyisfilqllnkgfgsilfteenqvyfdplinsilhfapatqkssia
lvskmvslagfenftlsltplcfempvnlvvlgelaglqkiileklgdiyksylvtvyfp
tdvmaseylqaiqalks

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ibvB (B:)
gpmsaqdvenaveaaldpsvgpiikqqatdfigslrssstgwkicheifsektkykpstr
liclqtlsekvrewnnesnllelqmirdsvwsyikelsfldepayisnavqhlltllflq
lypsnwndffaslqgviaassqsefsnfylkvllsigdeiadslvlktdvqiqkdnlvkd
airandmsdivsfvyemmlaysnaknygtvglclqvyaqwvswininlivnepcmnllys
flqieelrcaacetmteivnkkmkpleklnllnilnlnlffsksqeqstdpnfdehvakl
inaqgvelvaiksdpselspelkencsfqlynlfpylirylsddydetstavfpflsdll
vslrkessskelsaslkeflkslleaiikkmkydesqewdddpdseeeaefqemrkklki
fqdtinsidsslfssymysaitsslstaatlspenswqliefalyetyifgeglrgpdaf
fnevdksptvlsqilalvttsqvcrhphplvqllymeilvryasffdyesaaipalieyf
vgprgihntnervrprawylfyrfvksikkqvvnytesslamlgdllnisvspvtdmdap
vptlnssirnsdfnsqlylfetvgvlissgnltpeeqalycdslinaligkanaalssdl
saleniisvycslmaignfakgfpargseevawlasfnkasdeiflildrmgfnedirga
vrftsgriinvvgpdmlpkvpqlisillnsidmnelvdvlsfisqlihiykdnmmeitnr
mlptllmrifsslsaapqgtddavkqndlrksyisfilqllnkgfgsilfteenqvyfdp
linsilhfanlvgepatqkssialvskmvslwggkdgiagfenftlsltplcfempvnpn
fntrdgqslvvlgelaglqkiileklgdiyksylvtvyfptvnfpdvmaseylqalsnld
srsfkqffqkfiqalksgnv

    Sequence, based on observed residues (ATOM records): (download) 
    >3ibvB (B:)
msaqdvenaveaaldpsvgpiikqqatdfigslrssstgwkicheifsektkykpstrli
clqtlsekvrewnnesnllelqmirdsvwsyikelsfldepayisnavqhlltllflqly
psnwndffaslqgviaassqsefsnfylkvllsigdeiadslvlktdvqiqkdnlvkdai
randmsdivsfvyemmlaysnaknygtvglclqvyaqwvswininlivnepcmnllysfl
qieelrcaacetmteivnkkmkpleklnllnilnlnlffsksqtdpnfdehvaklinaqg
velvaiksdpselspelkencsfqlynlfpylirylsddydetstavfpflsdllvslrk
essskelsaslkeflkslleaiikkmkydesqewdddpdseeeaefqemrkklkifqdti
nsidsslfssymysaitsslstaatlspenswqliefalyetyifgeglrgpdaffndks
ptvlsqilalvttsqvcrhphplvqllymeilvryasffdyesaaipalieyfvgprgih
ntnervrprawylfyrfvksikkqvvnytesslamlgdllnisvspvtdmdapvptlnss
irnsdfnsqlylfetvgvlissgnltpeeqalycdslinaligkanaalssdlseniisv
ycslmaignfakgfpargseevawlasfnkasdeiflildrmgfnedirgavrftsgrii
nvvgpdmlpkvpqlisillnsidmnelvdvlsfisqlihiykdnmmeitnrmlptllmri
fsslsaddavkqndlrksyisfilqllnkgsifteenqvyfdplinsilhfatqkssial
vskmvslgfenftlsltplcfemlvvlgelaglqkiileksylvtvyfptdvmaseylqa
ls