PDB entry 3flu

View 3flu on RCSB PDB site
Description: Crystal structure of dihydrodipicolinate synthase from the pathogen Neisseria meningitidis
Class: lyase
Keywords: TIM barrel, beta-alpha-barrel, Amino-acid biosynthesis, Diaminopimelate biosynthesis, Lyase, Lysine biosynthesis, Schiff base
Deposited on 2008-12-19, released 2009-06-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Neisseria meningitidis serogroup B [TaxId:491]
    Gene: dapA, NMB0929
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JZR4 (6-296)
      • expression tag (3-5)
    Domains in SCOPe 2.07: d3flua1, d3flua2
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Neisseria meningitidis serogroup B [TaxId:491]
    Gene: dapA, NMB0929
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3flub_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Neisseria meningitidis serogroup B [TaxId:491]
    Gene: dapA, NMB0929
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JZR4 (6-296)
      • expression tag (5)
    Domains in SCOPe 2.07: d3fluc1, d3fluc2
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Neisseria meningitidis serogroup B [TaxId:491]
    Gene: dapA, NMB0929
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JZR4 (6-296)
      • expression tag (4-5)
    Domains in SCOPe 2.07: d3flud1, d3flud2
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fluA (A:)
gidpftmlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsve
ehtavieavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqeg
iyqhfktiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnieli
nrapegfvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelnd
rlipiydtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql

    Sequence, based on observed residues (ATOM records): (download) 
    >3fluA (A:)
pftmlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsveeht
avieavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqegiyq
hfktiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnielinra
pegfvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelndrli
piydtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3fluB (B:)
gidpftmlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsve
ehtavieavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqeg
iyqhfktiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnieli
nrapegfvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelnd
rlipiydtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql

    Sequence, based on observed residues (ATOM records): (download) 
    >3fluB (B:)
mlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsveehtavi
eavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqegiyqhfk
tiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnielinrapeg
fvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelndrlipiy
dtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3fluC (C:)
gidpftmlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsve
ehtavieavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqeg
iyqhfktiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnieli
nrapegfvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelnd
rlipiydtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql

    Sequence, based on observed residues (ATOM records): (download) 
    >3fluC (C:)
tmlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsveehtav
ieavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqegiyqhf
ktiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnielinrape
gfvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelndrlipi
ydtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fluD (D:)
gidpftmlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsve
ehtavieavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqeg
iyqhfktiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnieli
nrapegfvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelnd
rlipiydtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql

    Sequence, based on observed residues (ATOM records): (download) 
    >3fluD (D:)
ftmlqgslvalitpmnqdgsihyeqlrdlidwhiengtdgivavgttgesatlsveehta
vieavvkhvakrvpviagtganntveaialsqaaekagadytlsvvpyynkpsqegiyqh
fktiaeatsipmiiynvpgrtvvsmtndtilrlaeipnivgvkeasgnigsnielinrap
egfvvlsgddhtalpfmlcgghgvitvaanaapklfadmcraalqgdialarelndrlip
iydtmfcepspaapkwavsalgrcephvrlplvpltengqakvraalkasgql