PDB entry 3eyb

View 3eyb on RCSB PDB site
Description: Structural and functional insights into the ligand binding domain of a non-duplicated RXR from the invertebrate chordate amphioxus
Class: transcription
Keywords: Amphioxus, Retinoid X receptor, nuclear receptor, ligand binding, DNA-binding, Metal-binding, Nucleus, Receptor, Transcription, Transcription regulation, Zinc-finger, Structural Genomics, Structural Proteomics in Europe, SPINE
Deposited on 2008-10-20, released 2008-11-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-09-01, with a file datestamp of 2010-08-27.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: 0.202
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nuclear hormone receptor RXR
    Species: Branchiostoma floridae [TaxId:7739]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3eyba_
  • Chain 'B':
    Compound: Nuclear hormone receptor RXR
    Species: Branchiostoma floridae [TaxId:7739]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3eybb_
  • Chain 'C':
    Compound: Nuclear hormone receptor RXR
    Species: Branchiostoma floridae [TaxId:7739]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3eybc_
  • Chain 'D':
    Compound: Nuclear hormone receptor RXR
    Species: Branchiostoma floridae [TaxId:7739]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3eybd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3eybA (A:)
dmpvekiqeaemavepkdgnmveqpndpvtnicqaadkqlvtlvewakriphfsdlpidd
qvillragwnelliaafshrsidvkdgillasglhvhrssahqagvgtifdrvltelvak
mrdmkmdktelgclraivlfnpdakgltdpslveslrekvyasleeyckqqypeqpgrfa
klllrlpalrsiglkclehlfffkligdtpidtflmeml

    Sequence, based on observed residues (ATOM records): (download) 
    >3eybA (A:)
dmpvekiqeaemavepdkqlvtlvewakriphfsdlpiddqvillragwnelliaafshr
sidvkdgillasglhvhrssahqagvgtifdrvltelvakmrdmkmdktelgclraivlf
npdakgltdpslveslrekvyasleeyckqqypeqpgrfaklllrlpalrsiglkclehl
fffkligdtpidtflmeml

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3eybB (B:)
dmpvekiqeaemavepkdgnmveqpndpvtnicqaadkqlvtlvewakriphfsdlpidd
qvillragwnelliaafshrsidvkdgillasglhvhrssahqagvgtifdrvltelvak
mrdmkmdktelgclraivlfnpdakgltdpslveslrekvyasleeyckqqypeqpgrfa
klllrlpalrsiglkclehlfffkligdtpidtflmeml

    Sequence, based on observed residues (ATOM records): (download) 
    >3eybB (B:)
dmpvekiqeaemavepdkqlvtlvewakriphfsdlpiddqvillragwnelliaafshr
sidvkdgillasglhvhrssahqagvgtifdrvltelvakmrdmkmdktelgclraivlf
npdakgltdpslveslrekvyasleeyckqqypeqpgrfaklllrlpalrsiglkclehl
fffkligdtpidtflmeml

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3eybC (C:)
dmpvekiqeaemavepkdgnmveqpndpvtnicqaadkqlvtlvewakriphfsdlpidd
qvillragwnelliaafshrsidvkdgillasglhvhrssahqagvgtifdrvltelvak
mrdmkmdktelgclraivlfnpdakgltdpslveslrekvyasleeyckqqypeqpgrfa
klllrlpalrsiglkclehlfffkligdtpidtflmeml

    Sequence, based on observed residues (ATOM records): (download) 
    >3eybC (C:)
dmpvekiqeaemavepdkqlvtlvewakriphfsdlpiddqvillragwnelliaafshr
sidvkdgillasglhvhrssahqagvgtifdrvltelvakmrdmkmdktelgclraivlf
npdakgltdpslveslrekvyasleeyckqqypeqpgrfaklllrlpalrsiglkclehl
fffkligdtpidtflmeml

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3eybD (D:)
dmpvekiqeaemavepkdgnmveqpndpvtnicqaadkqlvtlvewakriphfsdlpidd
qvillragwnelliaafshrsidvkdgillasglhvhrssahqagvgtifdrvltelvak
mrdmkmdktelgclraivlfnpdakgltdpslveslrekvyasleeyckqqypeqpgrfa
klllrlpalrsiglkclehlfffkligdtpidtflmeml

    Sequence, based on observed residues (ATOM records): (download) 
    >3eybD (D:)
dmpvekiqeaemavepdkqlvtlvewakriphfsdlpiddqvillragwnelliaafshr
sidvkdgillasglhvhrssahqagvgtifdrvltelvakmrdmkmdktelgclraivlf
npdakgltdpslveslrekvyasleeyckqqypeqpgrfaklllrlpalrsiglkclehl
fffkligdtpidtflmeml