PDB entry 3dyv

View 3dyv on RCSB PDB site
Description: Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
Class: hydrolase
Keywords: alpha beta hydrolase, mechanism, catalytic triad, rotation, esterase
Deposited on 2008-07-28, released 2009-07-28
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-07-28, with a file datestamp of 2009-07-24.
Experiment type: XRAY
Resolution: 1.81 Å
R-factor: 0.197
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Esterase D
    Species: Lactobacillus rhamnosus [TaxId:486408]
    Gene: EstD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3dyva_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dyvA (A:)
gamgirnsifrkpqpfeyegtdtgvvllhaytgspndmnfmaralqrsgygvyvplfsgh
gtvepldiltkgnpdiwwaessaavahmtakyakvfvfglslggifamkaletlpgitag
gvfsspilpgkhhlvpgflkyaeymnrlagksdestqilaylpgqlaaidqfattvaadl
nlvkqptfigqagqdelvdgrlayqlrdalinaarvdfhwyddakhvitvnsahhaleed
viafmqqeneg

    Sequence, based on observed residues (ATOM records): (download) 
    >3dyvA (A:)
frkpqpfeyegtdtgvvllhaytgspndmnfmaralqrsgygvyvplfsghgtvepldil
tkgnpdiwwaessaavahmtakyakvfvfglslggifamkaletlpgitaggvfsspilp
gkhhlvpgflkyaeymnrlagksdestqilaylpgqlaaidqfattvaadlnlvkqptfi
gqagqdelvdgrlayqlrdalinaarvdfhwyddakhvitvnsahhaleedviafmqq