PDB entry 3den

View 3den on RCSB PDB site
Description: Structure of E. coli DHDPS mutant Y107W
Class: lyase
Keywords: dihydrodipicolinate synthase, monomer, quaternary structure, Amino-acid biosynthesis, Diaminopimelate biosynthesis, Lyase, Lysine biosynthesis, Schiff base
Deposited on 2008-06-10, released 2008-11-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.186
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L2 (0-291)
      • engineered (106)
    Domains in SCOPe 2.06: d3dena_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L2 (0-291)
      • engineered (106)
    Domains in SCOPe 2.06: d3denb_
  • Heterogens: K, GOL, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3denA (A:)
mftgsivaivtpmdekgnvcraslkklidyhvasgtsaivsvgttgesatlnhdehadvv
mmtldladgripviagtganataeaisltqrfndsgivgcltvtpywnrpsqeglyqhfk
aiaehtdlpqilynvpsrtgcdllpetvgrlakvkniigikeatgnltrvnqikelvsdd
fvllsgddasaldfmqlgghgvisvtanvaardmaqmcklaaeghfaearvinqrlmplh
nklfvepnpipvkwackelglvatdtlrlpmtpitdsgretvraalkhagll

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3denB (B:)
mftgsivaivtpmdekgnvcraslkklidyhvasgtsaivsvgttgesatlnhdehadvv
mmtldladgripviagtganataeaisltqrfndsgivgcltvtpywnrpsqeglyqhfk
aiaehtdlpqilynvpsrtgcdllpetvgrlakvkniigikeatgnltrvnqikelvsdd
fvllsgddasaldfmqlgghgvisvtanvaardmaqmcklaaeghfaearvinqrlmplh
nklfvepnpipvkwackelglvatdtlrlpmtpitdsgretvraalkhagll