PDB entry 3d1m

View 3d1m on RCSB PDB site
Description: Crystal Structure of Sonic Hedgehog Bound to the third FNIII domain of CDO
Class: signaling protein / cell adhesion
Keywords: Fibronectin Protein-Protein Complex, Autocatalytic cleavage, Developmental protein, Glycoprotein, Hydrolase, Lipoprotein, Membrane, Palmitate, Protease, Secreted, Immunoglobulin domain, Transmembrane, signaling protein - cell adhesion COMPLEX
Deposited on 2008-05-06, released 2008-09-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sonic hedgehog protein
    Species: Mus musculus [TaxId:10090]
    Gene: Shh, Hhg1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3d1ma_
  • Chain 'B':
    Compound: Sonic hedgehog protein
    Species: Mus musculus [TaxId:10090]
    Gene: Shh, Hhg1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3d1mb_
  • Chain 'C':
    Compound: Cell adhesion molecule
    Species: Homo sapiens [TaxId:9606]
    Gene: CDON, CDO
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3d1mc_
  • Chain 'D':
    Compound: Cell adhesion molecule
    Species: Homo sapiens [TaxId:9606]
    Gene: CDON, CDO
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3d1md_
  • Heterogens: ZN, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d1mA (A:)
gpgsgpgrgfgkrrhpkkltplaykqfipnvaektlgasgryegkitrnserfkeltpny
npdiifkdeentgadrlmtqrckdklnalaisvmnqwpgvklrvtegwdedghhseeslh
yegravdittsdrdrskygmlarlaveagfdwvyyeskahihcsvkae

    Sequence, based on observed residues (ATOM records): (download) 
    >3d1mA (A:)
tplaykqfipnvaektlgasgryegkitrnserfkeltpnynpdiifkdeentgadrlmt
qrckdklnalaisvmnqwpgvklrvtegwdedghhseeslhyegravdittsdrdrskyg
mlarlaveagfdwvyyeskahihcsvka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d1mB (B:)
gpgsgpgrgfgkrrhpkkltplaykqfipnvaektlgasgryegkitrnserfkeltpny
npdiifkdeentgadrlmtqrckdklnalaisvmnqwpgvklrvtegwdedghhseeslh
yegravdittsdrdrskygmlarlaveagfdwvyyeskahihcsvkae

    Sequence, based on observed residues (ATOM records): (download) 
    >3d1mB (B:)
ltplaykqfipnvaektlgasgryegkitrnserfkeltpnynpdiifkdeentgadrlm
tqrckdklnalaisvmnqwpgvklrvtegwdedghhseeslhyegravdittsdrdrsky
gmlarlaveagfdwvyyeskahihcsvkae

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3d1mC (C:)
gstpitgphiayteavsdtqimlkwtyipssnnntpiqgfyiyyrptdsdndsdykrdvv
egskqwhmighlqpetsydikmqcfneggesefsnvmicetk

    Sequence, based on observed residues (ATOM records): (download) 
    >3d1mC (C:)
gphiayteavsdtqimlkwtyiqgfyiyyrptdsdndsdykrdvvegskqwhmighlqpe
tsydikmqcfneggesefsnvmicetk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3d1mD (D:)
gstpitgphiayteavsdtqimlkwtyipssnnntpiqgfyiyyrptdsdndsdykrdvv
egskqwhmighlqpetsydikmqcfneggesefsnvmicetk

    Sequence, based on observed residues (ATOM records): (download) 
    >3d1mD (D:)
pitgphiayteavsdtqimlkwtyipssnnntpiqgfyiyyrptdsdndsdykrdvvegs
kqwhmighlqpetsydikmqcfneggesefsnvmicetk