PDB entry 3cmo
View 3cmo on RCSB PDB site
Description: HIV neutralizing monoclonal antibody YZ18
Class: Immune System
Keywords: HIV-1, monoclonal antibody, Immune System
Deposited on
2008-03-24, released
2008-08-05
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.248
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: Fab heavy chain
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3cmoh1 - Chain 'L':
Compound: Fab light chain
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3cmol1, d3cmol2 - Chain 'X':
Compound: Fab light chain
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3cmox1, d3cmox2 - Chain 'Y':
Compound: Fab heavy chain
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3cmoy1 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>3cmoH (H:)
avqlsqsgtvlarpgasvkmsckasgytftsywmhwvkqrpgqglewigaiypgnsdtsy
nqkfkgkakltavtsastaymelssltnedsavyyctrwphyyggsryyfdywgqgttlt
vssakttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavl
qsdlytlsssvtvtsstwpsqsitcnvahpasstkvdkkiep
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3cmoL (L:)
divmtqsssslsaslgdrvtiscrasqdisnylnwyqqkpdgtvelliyytsrlqsgvps
rfsgsgsgsdysltisnlvpediatyycqqysklftfgsgtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnr
- Chain 'X':
Sequence, based on SEQRES records: (download)
>3cmoX (X:)
divmtqsssslsaslgdrvtiscrasqdisnylnwyqqkpdgtvelliyytsrlqsgvps
rfsgsgsgsdysltisnlvpediatyycqqysklftfgsgtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnr
Sequence, based on observed residues (ATOM records): (download)
>3cmoX (X:)
ivmtqsssslsaslgdrvtiscrasqdisnylnwyqqkpdgtvelliyytsrlqsgvpsr
fsgsgsgsdysltisnlvpediatyycqqysklftfgsgtkleikradaaptvsifppss
eqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltlt
kdeyerhnsytceathktstspivksfnr
- Chain 'Y':
Sequence; same for both SEQRES and ATOM records: (download)
>3cmoY (Y:)
avqlsqsgtvlarpgasvkmsckasgytftsywmhwvkqrpgqglewigaiypgnsdtsy
nqkfkgkakltavtsastaymelssltnedsavyyctrwphyyggsryyfdywgqgttlt
vssakttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavl
qsdlytlsssvtvtsstwpsqsitcnvahpasstkvdkkiep