PDB entry 3bqq

View 3bqq on RCSB PDB site
Description: Crystal Structure of Human Saposin D (triclinic)
Class: lipid binding protein
Keywords: saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase, farber disease, lipid metabolism, lysosome, sphingolipid metabolism
Deposited on 2007-12-20, released 2008-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.198
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Proactivator polypeptide
    Species: Homo sapiens [TaxId:9606]
    Gene: PSAP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bqqa_
  • Chain 'B':
    Compound: Proactivator polypeptide
    Species: Homo sapiens [TaxId:9606]
    Gene: PSAP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bqqb_
  • Chain 'C':
    Compound: Proactivator polypeptide
    Species: Homo sapiens [TaxId:9606]
    Gene: PSAP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bqqc_
  • Chain 'D':
    Compound: Proactivator polypeptide
    Species: Homo sapiens [TaxId:9606]
    Gene: PSAP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3bqqd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3bqqA (A:)
dggfcevckklvgyldrnleknstkqeilaalekgcsflpdpyqkqcdqfvaeyepvlie
ilvevmdpsfvclkigacps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bqqB (B:)
dggfcevckklvgyldrnleknstkqeilaalekgcsflpdpyqkqcdqfvaeyepvlie
ilvevmdpsfvclkigacps

    Sequence, based on observed residues (ATOM records): (download) 
    >3bqqB (B:)
ggfcevckklvgyldrnleknstkqeilaalekgcsflpdpyqkqcdqfvaeyepvliei
lvevmdpsfvclkigacp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3bqqC (C:)
dggfcevckklvgyldrnleknstkqeilaalekgcsflpdpyqkqcdqfvaeyepvlie
ilvevmdpsfvclkigacps

    Sequence, based on observed residues (ATOM records): (download) 
    >3bqqC (C:)
dggfcevckklvgyldrnleknstkqeilaalekgcsflpdpyqkqcdqfvaeyepvlie
ilvevmdpsfvclkigacp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3bqqD (D:)
dggfcevckklvgyldrnleknstkqeilaalekgcsflpdpyqkqcdqfvaeyepvlie
ilvevmdpsfvclkigacps

    Sequence, based on observed residues (ATOM records): (download) 
    >3bqqD (D:)
ggfcevckklvgyldrnleknstkqeilaalekgcsflpdpyqkqcdqfvaeyepvliei
lvevmdpsfvclkigacps