PDB entry 3b54

View 3b54 on RCSB PDB site
Description: Saccharomyces cerevisiae nucleoside diphosphate kinase
Class: transferase
Keywords: ALPHA/BETA sandwich, ATP-binding, Kinase, Magnesium, Metal-binding, Mitochondrion, Nucleotide metabolism, Nucleotide-binding, Phosphorylation, Transferase
Deposited on 2007-10-25, released 2008-10-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.232
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NDK1, YNK, YNK1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3b54a_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NDK1, YNK, YNK1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3b54b_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3b54A (A:)
mghhhhhhmssqtertfiavkpdgvqrglvsqilsrfekkgyklvaiklvkaddklleqh
yaehvgkpffpkmvsfmksgpilatvwegkdvvrqgrtilgatnplgsapgtirgdfgid
lgrnvchgsdsvdsaereinlwfkkeelvdwesnqakwiye

    Sequence, based on observed residues (ATOM records): (download) 
    >3b54A (A:)
ssqtertfiavkpdgvqrglvsqilsrfekkgyklvaiklvkaddklleqhyafpkmvsf
mksgpilatvwegkdvvrqgrtilgatnplgsapgtirgdfgidlgrnvchgsdsvdsae
reinlwfkkeelvdwesnqakwiye

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3b54B (B:)
mghhhhhhmssqtertfiavkpdgvqrglvsqilsrfekkgyklvaiklvkaddklleqh
yaehvgkpffpkmvsfmksgpilatvwegkdvvrqgrtilgatnplgsapgtirgdfgid
lgrnvchgsdsvdsaereinlwfkkeelvdwesnqakwiye

    Sequence, based on observed residues (ATOM records): (download) 
    >3b54B (B:)
ssqtertfiavkpdgvqrglvsqilsrfekkgyklvaiklvkaddklleqhyafpkmvsf
mksgpilatvwegkdvvrqgrtilgatnplgsapgtirgdfgidlgrnvchgsdsvdsae
reinlwfkkeelvdwesnqakwiye