PDB entry 2rdi

View 2rdi on RCSB PDB site
Description: Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms
Class: transferase
Keywords: DNA polymerase, apo-enzyme, Y-family, DNA damage, DNA repair, DNA replication, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Transferase
Deposited on 2007-09-24, released 2008-06-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: SULFOLOBUS SOLFATARICUS
    Gene: dbh, dpo4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rdia1, d2rdia2
  • Heterogens: PEG, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2rdiA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfit

    Sequence, based on observed residues (ATOM records): (download) 
    >2rdiA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgavatanyearkfgvkagipiveakk
ilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgl
eiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgi
gnitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrksig
rivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgi
sketaysesvkllqkileederkirrigvrfskfit