PDB entry 2qkf

View 2qkf on RCSB PDB site
Description: Crystal structure of 3-deoxy-d-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Class: transferase
Keywords: MANNO-OCTULOSONATE, SYNTHASE, LIPOPOLYSACCHARIDE, KDOP, KDO8 KDOPS, KDO8PS, TIM barrel, Lipopolysaccharide biosynthesis, Transferase, LYASE
Deposited on 2007-07-11, released 2008-07-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.197
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase
    Species: Neisseria meningitidis serogroup B
    Gene: kdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qkfa_
  • Chain 'B':
    Compound: 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase
    Species: Neisseria meningitidis serogroup B
    Gene: kdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qkfb_
  • Chain 'C':
    Compound: 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase
    Species: Neisseria meningitidis serogroup B
    Gene: kdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qkfc_
  • Chain 'D':
    Compound: 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase
    Species: Neisseria meningitidis serogroup B
    Gene: kdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qkfd_
  • Heterogens: CL, NA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2qkfA (A:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpd
pklakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >2qkfA (A:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqgrraqaldlalagmatrlaglfleslhlledflirika
lddliksqpil

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2qkfB (B:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpd
pklakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >2qkfB (B:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqgrraqaldlalagmatrlaglfleslledflirikald
dliksqpilti

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2qkfC (C:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpd
pklakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >2qkfC (C:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqraqaldlalagmatrlaglfleshpdsalplhlledfl
irikalddliksqpil

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2qkfD (D:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpd
pklakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >2qkfD (D:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkanr
ssihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtd
lvvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlg
fgvmkqtcgnlpvifdvthslqtaqaldlalagmatrlaglfleshalplhlledfliri
kalddliksqpil