PDB entry 2q2t

View 2q2t on RCSB PDB site
Description: Structure of Chlorella virus DNA ligase-adenylate bound to a 5' phosphorylated nick
Class: ligase/DNA
Keywords: ligase, lysine adenylate, protein-DNA complex, ligase/DNA complex
Deposited on 2007-05-29, released 2007-07-10
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.214
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2q2ta1, d2q2ta2
  • Chain 'B':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'C':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*c)-3'
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: 5'-d(p*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Heterogens: AMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2q2tA (A:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr

    Sequence, based on observed residues (ATOM records): (download) 
    >2q2tA (A:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.