PDB entry 2pzs

View 2pzs on RCSB PDB site
Description: Phi29 DNA polymerase complexed with primer-template DNA (post-translocation binary complex)
Class: replication, transferase/DNA
Keywords: protein-dna complex, REPLICATION, TRANSFERASE/DNA COMPLEX
Deposited on 2007-05-18, released 2007-07-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.225
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680 (Start-574)
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.06: d2pzsa1, d2pzsa2
  • Chain 'B':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680 (Start-574)
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.06: d2pzsb1, d2pzsb2
  • Chain 'C':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680 (Start-574)
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.06: d2pzsc1, d2pzsc2
  • Chain 'D':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.06: d2pzsd1, d2pzsd2
  • Chain 'R':
    Compound: 5'-d(GACTGCTTAC)-3'
  • Chain 'S':
    Compound: 5'-d(CTAACACGTAAGCAGTC)-3'
  • Chain 'T':
    Compound: 5'-d(CTAACACGTAAGCAGTC)-3'
  • Chain 'U':
    Compound: 5'-d(CTAACACGTAAGCAGTC)-3'
  • Chain 'X':
    Compound: 5'-d(GACTGCTTAC)-3'
  • Chain 'Y':
    Compound: 5'-d(CTAACACGTAAGCAGTC)-3'
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pzsA (A:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2pzsA (A:)
prkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhnlk
fagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviydslk
klpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfkqg
ldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeige
gmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqi
krsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfi
dkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdp
vytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywa
hestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfe
nfkvgfsrkmkpkpvqvpggvvlvddtftik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pzsB (B:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2pzsB (B:)
prkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhnlk
fagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviydslk
klpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfkqg
ldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeige
gmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqi
kkgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkwty
ikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvytpm
gvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahestf
krakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfkvg
fsrkmkpkpvqvpggvvlvddtftik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2pzsC (C:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2pzsC (C:)
prkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhnlk
fagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviydslk
klpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfkqg
ldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeige
gmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqi
keylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkwtyikt
tsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvytpmgvf
itawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahestfkra
kylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfkvgfsr
kmkpkpvqvpggvvlvddtftik

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2pzsD (D:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2pzsD (D:)
prkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhnlk
fagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviydslk
klpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfkqg
ldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeige
gmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqi
kyneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkwtyi
kttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvytpmg
vfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahestfk
rakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfkvgf
srkmkpkpvqvpggvvlvddtfti

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    No sequence available.

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.