PDB entry 2py5

View 2py5 on RCSB PDB site
Description: Phi29 DNA polymerase complexed with single-stranded DNA
Class: replication, transferase/DNA
Keywords: protein-dna complex, REPLICATION, TRANSFERASE/DNA COMPLEX
Deposited on 2007-05-15, released 2007-07-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.165
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680 (Start-574)
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.06: d2py5a1, d2py5a2
  • Chain 'B':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680 (Start-574)
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.06: d2py5b1, d2py5b2
  • Chain 'D':
    Compound: 5'-d(GGACTTT)-3'
  • Chain 'E':
    Compound: 5'-d(GGACTTT)-3'
  • Chain 'J':
    Compound: 5'-d(GGACTTT)-3'
  • Chain 'L':
    Compound: 5'-d(GGACTTT)-3'
  • Chain 'Y':
    Compound: 5'-d(GGACTTT)-3'
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2py5A (A:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2py5A (A:)
prkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhnlk
fagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviydslk
klpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfkqg
ldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeige
gmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqi
gneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkwtyik
ttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvytpmgv
fitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahestfkr
akylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfkvgfs
rkmkpkpvqvpggvvlvddtftik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2py5B (B:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2py5B (B:)
prkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhnlk
fagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviydslk
klpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfkqg
ldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeige
gmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqi
eylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkwtyiktt
segaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvytpmgvfi
tawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahestfkrak
ylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfkvgfsrk
mkpkpvqvpggvvlvddtftik

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'Y':
    No sequence available.