PDB entry 2jea
View 2jea on RCSB PDB site
Description: structure of a 9-subunit archaeal exosome bound to RNA
Class: hydrolase/RNA
Keywords: hydrolase RNA complex, hydrolase-RNA complex, nuclease, hydrolase, RNA-binding, exonuclease, phosphorolytic, exoribonuclease, RNA degradation, rrp4, rrp42, rrp41, exosome, RNAse ph
Deposited on
2007-01-16, released
2007-04-03
The last revision prior to the SCOPe 2.01 freeze date was dated
2010-02-02, with a file datestamp of
2010-03-19.
Experiment type: XRAY
Resolution: 2.33 Å
R-factor: 0.207
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- PDB 2JEA (0-1)
- Uniprot Q9UXC0 (2-276)
Domains in SCOPe 2.01: d2jeaa1, d2jeaa2 - Chain 'B':
Compound: exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- PDB 2JEA
- engineered mutation (183)
- Uniprot Q9UXC2
Domains in SCOPe 2.01: d2jeab1, d2jeab2 - Chain 'C':
Compound: RNA
- Chain 'I':
Compound: exosome complex RNA-binding protein 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2jeai1, d2jeai2, d2jeai3 - Heterogens: 1PE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2jeaA (A:)
ghmsstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvkl
gttmvlagtkleidkpyedtpnqgnlivnvellplayetfepgppdenaielarvvdrsl
rdskaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqhsn
gisvnknevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgi
qksgkgsmslqdidqaentarstavklleelkkhlgi
Sequence, based on observed residues (ATOM records): (download)
>2jeaA (A:)
ghmsstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvkl
gttmvlagtkleidkpyedtpnqgnlivnvellplayetfepgppdenaielarvvdrsl
rdskaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqhis
vnknevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqks
gkgsmslqdidqaentarstavklleelkkhlgi
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2jeaB (B:)
ghmremlqverpklilddgkrtdgrkpdelrsikielgvlknadgsaifemgntkaiaav
ygpkemhprhlslpdravlrvryhmtpfstderknpapsrreielskvirealesavlve
lfprtaidvfteilqadagsrlvslmaaslaladagipmrdliagvavgkadgviildln
eteamwgeadmpiammpslnqvtlfqlngsmtpdefrqafdlavkginiiynlerealks
kyvefkeegv
Sequence, based on observed residues (ATOM records): (download)
>2jeaB (B:)
erpklilddgkrtdgrkpdelrsikielgvlknadgsaifemgntkaiaavygpkemhpr
hlslpdravlrvryhmtpfstderknpapsrreielskvirealesavlvelfprtaidv
fteilqadagsrlvslmaaslaladagipmrdliagvavgkadgviildlneteamwgea
dmpiammpslnqvtlfqlngsmtpdefrqafdlavkginiiynlerealkskyv
- Chain 'C':
No sequence available.
- Chain 'I':
Sequence, based on SEQRES records: (download)
>2jeaI (I:)
ghmnmsqsqeivlqprsivvpgellaegefqipwspyilkinskyystvvglfdvkdtqf
eviplegsfyypkindiviglvedveiygwvvdikapykaylpasnllgrsinvgedlrr
yldvgdyviarienfdrsidpvlsvkgkdlgrvsngividimpvkvprvigknksmyetl
tsksgcsifvanngriwatcpsrfseeilieairkieneshikgltdrikqfieeklger
nassgetktns
Sequence, based on observed residues (ATOM records): (download)
>2jeaI (I:)
qeivlqprsivvpgellaegefqipwspyilkinskyystvvglfdvkdtqfeviplegs
fyypkindiviglvedveiygwvvdikapykaylpasnllgrsinvgedlrryldvgdyv
iarienfdrsidpvlsvkgkdlgrvsngividimpvkvprvigknksmyetltsksifva
nngriwafseeilieairkieneshik