PDB entry 2ido

View 2ido on RCSB PDB site
Description: Structure of the E. coli Pol III epsilon-Hot proofreading complex
Class: transferase
Keywords: Polymerase, exonuclease, Hot, epsilon, Pol III
Deposited on 2006-09-15, released 2006-11-14
The last revision prior to the SCOP 1.75 freeze date was dated 2007-02-06, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.206
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase III epsilon subunit
    Species: Escherichia coli
    Gene: dnaQ, mutD
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2idoa1
  • Chain 'B':
    Compound: Hot protein
    Species: Bacteriophage P1
    Gene: hot
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2idob1
  • Chain 'C':
    Compound: DNA polymerase III epsilon subunit
    Species: Escherichia coli
    Gene: dnaQ, mutD
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2idoc1
  • Chain 'D':
    Compound: Hot protein
    Species: Bacteriophage P1
    Gene: hot
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2idod1
  • Heterogens: MN, TMP, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2idoA (A:)
mstaitrqivldtettgmnqigahyeghkiieigavevvnrrltgnnfhvylkpdrlvdp
eafgvhgiadeflldkptfaevadefmdyirgaelvihnaafdigfmdyefsllkrdipk
tntfckvtdslavarkmfpgkrnsldalcaryeidnskrtlhgalldaqilaevylamtg
gqtsma

    Sequence, based on observed residues (ATOM records): (download) 
    >2idoA (A:)
trqivldtettgmnqigahyeghkiieigavevvnrrltgnnfhvylkpdrlvdpeafgv
hgiadeflldkptfaevadefmdyirgaelvihnaafdigfmdyefsllkrdipktntfc
kvtdslavarkmfpgkrnsldalcaryeidnsrlhgalldaqilaevylamtg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2idoB (B:)
mydwniaaksqeerdkvnvdlaasgvaykerlnipviaeqvareqpenlrtyfmerlrhy
rqlslqlpkgsdpayqkddavkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2idoB (B:)
ydwniaaksqeerdkvnvdlaasgvaykerlnipviaeqvareqpenlrtyfmerlrhyr
qlslqlpkgsdpayq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2idoC (C:)
mstaitrqivldtettgmnqigahyeghkiieigavevvnrrltgnnfhvylkpdrlvdp
eafgvhgiadeflldkptfaevadefmdyirgaelvihnaafdigfmdyefsllkrdipk
tntfckvtdslavarkmfpgkrnsldalcaryeidnskrtlhgalldaqilaevylamtg
gqtsma

    Sequence, based on observed residues (ATOM records): (download) 
    >2idoC (C:)
trqivldtettgmnqigahyeghkiieigavevvnrrltgnnfhvylkpdrlvdpeafgv
hgiadeflldkptfaevadefmdyirgaelvihnaafdigfmdyefsllkrdipktntfc
kvtdslavarkmfpgkrnsldalcaryeidnskrtlhgalldaqilaevylamtg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2idoD (D:)
mydwniaaksqeerdkvnvdlaasgvaykerlnipviaeqvareqpenlrtyfmerlrhy
rqlslqlpkgsdpayqkddavkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2idoD (D:)
mydwniaaksqeerdkvnvdlaasgvaykerlnipviaeqvareqpenlrtyfmerlrhy
rqlslqlpkgsdpayq