PDB entry 2h1o

View 2h1o on RCSB PDB site
Description: Structure of FitAB bound to IR36 DNA fragment
Class: gene regulation/DNA complex
Keywords: PIN domain, RHH protein, DNA binding, tetramer of dimers, GENE REGULATION/DNA COMPLEX COMPLEX
Deposited on 2006-05-16, released 2006-09-26
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.212
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: trafficking protein b
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RF91 (0-137)
      • engineered (42)
      • engineered (62)
      • engineered (115)
      • expression tag (138-142)
    Domains in SCOPe 2.06: d2h1oa1, d2h1oa2
  • Chain 'B':
    Compound: trafficking protein b
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RF91 (0-137)
      • engineered (42)
      • engineered (62)
      • engineered (115)
      • expression tag (138-139)
    Domains in SCOPe 2.06: d2h1ob1, d2h1ob2
  • Chain 'C':
    Compound: trafficking protein b
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RF91 (0-137)
      • engineered (42)
      • engineered (62)
      • engineered (115)
      • expression tag (138-142)
    Domains in SCOPe 2.06: d2h1oc1, d2h1oc2
  • Chain 'D':
    Compound: trafficking protein b
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RF91 (0-137)
      • engineered (42)
      • engineered (62)
      • engineered (115)
      • expression tag (138-139)
    Domains in SCOPe 2.06: d2h1od1, d2h1od2
  • Chain 'E':
    Compound: trafficking protein a
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2h1oe1
  • Chain 'F':
    Compound: trafficking protein a
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2h1of1
  • Chain 'G':
    Compound: trafficking protein a
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2h1og1
  • Chain 'H':
    Compound: trafficking protein a
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: fitA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2h1oh1
  • Chain 'U':
    Compound: IR36-strand 1
    Species: synthetic, synthetic
  • Chain 'V':
    Compound: IR36-strand 2
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2h1oA (A:)
milldtnviseplrpqpnervvawldsliledvylsaitvaemrlgvalllngkkknvlh
ermeqsilplfagrilpfdepvaaiyaqirsyakthgkeiaaadgyiaatakqhsmtvat
rdtgsffaadvavfnpwhlehhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2h1oB (B:)
milldtnviseplrpqpnervvawldsliledvylsaitvaemrlgvalllngkkknvlh
ermeqsilplfagrilpfdepvaaiyaqirsyakthgkeiaaadgyiaatakqhsmtvat
rdtgsffaadvavfnpwhlehhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2h1oB (B:)
milldtnviseplrpqpnervvawldsliledvylsaitvaemrlgvalllngkkknvlh
ermeqsilplfagrilpfdepvaaiyaqirsyakthgkeiaaadgyiaatakqhsmtvat
rdtgsffaadvavfnpwhle

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2h1oC (C:)
milldtnviseplrpqpnervvawldsliledvylsaitvaemrlgvalllngkkknvlh
ermeqsilplfagrilpfdepvaaiyaqirsyakthgkeiaaadgyiaatakqhsmtvat
rdtgsffaadvavfnpwhlehhh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2h1oD (D:)
milldtnviseplrpqpnervvawldsliledvylsaitvaemrlgvalllngkkknvlh
ermeqsilplfagrilpfdepvaaiyaqirsyakthgkeiaaadgyiaatakqhsmtvat
rdtgsffaadvavfnpwhlehhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2h1oD (D:)
milldtnviseplrpqpnervvawldsliledvylsaitvaemrlgvalllngkkknvlh
ermeqsilplfagrilpfdepvaaiyaqirsyakthgkeiaaadgyiaatakqhsmtvat
rdtgsffaadvavfnpwhle

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2h1oE (E:)
asvvirnlseathnaikfraraagrsteaeirlildniakaqqtvrlgsmlasigqeigg
veledvrg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2h1oF (F:)
asvvirnlseathnaikfraraagrsteaeirlildniakaqqtvrlgsmlasigqeigg
veledvrg

    Sequence, based on observed residues (ATOM records): (download) 
    >2h1oF (F:)
asvvirnlseathnaikfraraagrsteaeirlildniakaqqtvrlgsmlasigqeigg
vele

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2h1oG (G:)
asvvirnlseathnaikfraraagrsteaeirlildniakaqqtvrlgsmlasigqeigg
veledvrg

    Sequence, based on observed residues (ATOM records): (download) 
    >2h1oG (G:)
asvvirnlseathnaikfraraagrsteaeirlildniakaqqtvrlgsmlasigqeigg
veledvr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2h1oH (H:)
asvvirnlseathnaikfraraagrsteaeirlildniakaqqtvrlgsmlasigqeigg
veledvrg

    Sequence, based on observed residues (ATOM records): (download) 
    >2h1oH (H:)
asvvirnlseathnaikfraraagrsteaeirlildniakaqqtvrlgsmlasigqeigg
vel

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    No sequence available.