PDB entry 2fdc

View 2fdc on RCSB PDB site
Description: Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complex
Class: DNA binding protein/DNA
Keywords: Protein-DNA complex, UvrB, UvrC, UvrD, UvrA, NER, nucleotide excision repair, DNA repair, DNA BINDING PROTEIN-DNA COMPLEX
Deposited on 2005-12-13, released 2006-03-14
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.21
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UvrABC system protein B
    Species: Bacillus caldotenax [TaxId:1395]
    Gene: uvrB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2fdca1, d2fdca2
  • Chain 'B':
    Compound: UvrABC system protein B
    Species: Bacillus caldotenax [TaxId:1395]
    Gene: uvrB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56981 (0-End)
      • see remark 999 (188)
      • see remark 999 (232)
    Domains in SCOPe 2.01: d2fdcb1, d2fdcb2
  • Chain 'C':
    Compound: 5'-d(p*cp*gp*gp*cp*tp*cp*cp*ap*tp*cp*tp*cp*tp*ap*cp*cp*gp*cp*ap*a)-3'
  • Chain 'D':
    Compound: 5'-d(p*cp*gp*gp*cp*tp*cp*cp*ap*tp*cp*tp*cp*tp*ap*cp*cp*gp*cp*ap*a)-3'
  • Heterogens: FLQ

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2fdcA (A:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvsciyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehcirveffgdeierirevdaltgevlgereh
vaifpashfvtreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfcsgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseik
tlerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigr
aarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeirdviraty
aaeetemyeakpaaamtkqereelirtleaemkeaakaldferaaqlrdiifelkaeg

    Sequence, based on observed residues (ATOM records): (download) 
    >2fdcA (A:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvsciyglgspeeyrelvvifpashfvtreekmrlaiqni
eqeleerlaelraqgklleaqrleqrtrydlemmremgfcsgienysrhlalrppgstpy
tlldyfpddfliivdeshvtlpqlrgmyngdrarkqvlvdhgfrlpsaldnrpltfeefe
qkinqiiyvsatpgpyelehspgvveqiirptglldptidvrptkgqiddligeirerve
rnertlvttltkkmaedltdylkeagikvaylherieiirdlrlgkydvlvginllregl
dipevslvaildadkegflrsersliqtigraarnanghvimyadtitksmeiaiqetkr
rraiqeeynrkhgivprtvkkeird

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2fdcB (B:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvsciyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehcirveffgdeierirevdaltgevlgereh
vaifpashfvtreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfcsgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseik
tlerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigr
aarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeirdviraty
aaeetemyeakpaaamtkqereelirtleaemkeaakaldferaaqlrdiifelkaeg

    Sequence, based on observed residues (ATOM records): (download) 
    >2fdcB (B:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvsciyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehcirveffgdeierirevdaltgevlgereh
vaifpashfvtreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfcsgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhieii
rdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigraarnangh
vimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.