PDB entry 2dpj

View 2dpj on RCSB PDB site
Description: structure of hPoli with DNA and dTTP
Class: transferase/DNA
Keywords: DNA dependent DNA Polymerase, ethenodA adduct, lesion bypass, dTTP, TRANSFERASE-DNA COMPLEX
Deposited on 2006-05-12, released 2006-07-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.241
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase iota
    Species: Homo sapiens [TaxId:9606]
    Gene: POLI, RAD30B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2dpja1, d2dpja2
  • Chain 'P':
    Compound: 5'-d(*ap*gp*gp*ap*cp*cp*(doc))-3'
  • Chain 'T':
    Compound: 5'-d(*tp*(eda)p*gp*gp*gp*tp*cp*cp*t)-3'
  • Heterogens: MG, TTP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2dpjA (A:)
meladvgaaassqgvhdqvlptpnassrvivhvdldcfyaqvemisnpelkdkplgvqqk
ylvvtcnyearklgvkklmnvrdakekcpqlvlvngedltryremsykvtelleefspvv
erlgfdenfvdltemvekrlqqlqsdelsavtvsghvynnqsinlldvlhirllvgsqia
aemreamynqlgltgcagvasnkllaklvsgvfkpnqqtvllpescqhlihslnhikeip
gigyktakclealginsvrdlqtfspkilekelgisvaqriqklsfgednspvilsgppq
sfseedsfkkcsseveaknkieellasllnrvcqdgrkphtvrliirryssekhygresr
qcpipshviqklgtgnydvmtpmvdilmklfrnmvnvkmpfhltllsvcfcnlkalntak

    Sequence, based on observed residues (ATOM records): (download) 
    >2dpjA (A:)
assrvivhvdldcfyaqvemisnpelkdkplgvqqkylvvtcnyearklgvkklmnvrda
kekcpqlvlvngedltryremsykvtelleefspvverlgfdenfvdltemvekrlqqlq
sdelsavtvsghvynnqsinlldvlhirllvgsqiaaemreamynqlgltgcagvasnkl
laklvsgvfkpnqqtvllpescqhlihslnhikeipgigyktakclealginsvrdlqtf
spkilekelgisvaqriqklsfgednspvilsgppqsfseedsfkkcsseveaknkieel
lasllnrvcqdgrkphtvrliirryssekhygresrqcpipshviqvmtpmvdilmklfr
nmtllsvcfcnlk

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.