PDB entry 2d1s

View 2d1s on RCSB PDB site
Description: Crystal structure of the thermostable Japanese Firefly Luciferase complexed with High-energy intermediate analogue
Class: Oxidoreductase
Keywords: ALPHA/BETA, BETA BARREL, ALPHA+BETA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, Oxidoreductase
Deposited on 2005-08-31, released 2006-03-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: 0.181
AEROSPACI score: 0.74 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Luciferin 4-monooxygenase
    Species: Luciola cruciata [TaxId:7051]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13129
      • modified residue (63)
      • engineered (216)
    Domains in SCOPe 2.08: d2d1sa_
  • Heterogens: CL, SLU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d1sA (A:)
menmendenivvgpkpfypieegsagtqlrkymeryaklgaiaftnavtgvdysyaeyle
kscclgkalqnyglvvdgrialcsenceeffipviaglfigvgvaptneiytlrelvhsl
giskptivfsskkgldkvitvqktvttiktivildskvdyrgyqcldtfikrntppgfqa
ssfktvevdrkeqvalimnssgstglpkgvqlthenivtrfshardpiygnqvspgtavl
tvvpfhhgfgmfttlgylicgfrvvmltkfdeetflktlqdykctsvilvptlfailnks
ellnkydlsnlveiasggaplskevgeavarrfnlpgvrqgygltettsaiiitpegddk
pgasgkvvplfkakvidldtkkslgpnrrgevcvkgpmlmkgyvnnpeatkelideegwl
htgdigyydeekhffivdrlkslikykgyqvppaelesvllqhpsifdagvagvpdpvag
elpgavvvlesgknmtekevmdyvasqvsnakrlrggvrfvdevpkgltgkidgrairei
lkkpvakm

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1sA (A:)
denivvgpkpfypieegsagtqlrkymeryaklgaiaftnavtgvdysyaeylekscclg
kalqnyglvvdgrialcsenceeffipviaglfigvgvaptneiytlrelvhslgiskpt
ivfsskkgldkvitvqktvttiktivildskvdyrgyqcldtfikrntppgfqassfktv
evdrkeqvalimnssgstglpkgvqlthenivtrfshardpiygnqvspgtavltvvpfh
hgfgmfttlgylicgfrvvmltkfdeetflktlqdykctsvilvptlfailnksellnky
dlsnlveiasggaplskevgeavarrfnlpgvrqgygltettsaiiitpegddkpgasgk
vvplfkakvidldtkkslgpnrrgevcvkgpmlmkgyvnnpeatkelideegwlhtgdig
yydeekhffivdrlkslikykgyqvppaelesvllqhpsifdagvagvpdpvagelpgav
vvlesgknmtekevmdyvasqvsnakrlrggvrfvdevpkgltgkidgraireilkkpv