PDB entry 2c5c

View 2c5c on RCSB PDB site
Description: Shiga-like toxin 1 B subunit complexed with a bivalent inhibitor
Class: toxin
Keywords: bacterial exotoxin, gb3 binding activity, bivalent ligand, protein-carbohydrate recognition, ob fold, toxin
Deposited on 2005-10-26, released 2006-11-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.94 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5ca_
• Chain 'B':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5cb_
• Chain 'C':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5cc_
• Chain 'D':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5cd_
• Chain 'E':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5ce_
• Chain 'F':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5cf_
• Chain 'G':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5cg_
• Chain 'H':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5ch_
• Chain 'I':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5ci_
• Chain 'J':
  Compound: shiga-like toxin 1 b subunit
  Species: BACTERIOPHAGE H30 [TaxId:12371]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P69179 (0-68)
  Domains in SCOPe 2.08: d2c5cj_
• Heterogens: S10, GLA, SO4, HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cA (A:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cB (B:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cC (C:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cD (D:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cE (E:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cF (F:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'G':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cG (G:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cH (H:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cI (I:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr
  

  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c5cJ (J:)
  tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
  ggfsevifr