PDB entry 2b8p
View 2b8p on RCSB PDB site
Description: Crystal structure of Acanthamoeba polyphaga mimivirus NDK, the first viral nucleoside diphosphate kinase
Class: transferase
Keywords: NDK, phosphotransferase, nucleotide binding
Deposited on
2005-10-10, released
2005-11-15
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-08-25, with a file datestamp of
2009-08-21.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.202
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Probable nucleoside diphosphate kinase
Species: Mimivirus [TaxId:315393]
Gene: ndk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2b8pa1 - Chain 'B':
Compound: Probable nucleoside diphosphate kinase
Species: Mimivirus [TaxId:315393]
Gene: ndk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2b8pb1 - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2b8pA (A:)
syyhhhhhhlestslykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwsk
aprnlieqhykehseqsyfndncdfmvsgpiisivyegtdaiskirrlqgniltpgtirg
dlandirenlihasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>2b8pA (A:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykeyfn
dncdfmvsgpiisivyegtdaiskirrlqgniltpgtirgdlandirenlihasdsedsa
vdeisiwfp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2b8pB (B:)
syyhhhhhhlestslykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwsk
aprnlieqhykehseqsyfndncdfmvsgpiisivyegtdaiskirrlqgniltpgtirg
dlandirenlihasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>2b8pB (B:)
glqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyf
ndncdfmvsgpiisivyegtdaiskirrlqgniltpgtirgdlandirenlihasdseds
avdeisiwfp