PDB entry 2b4j
View 2b4j on RCSB PDB site
Description: Structural basis for the recognition between HIV-1 integrase and LEDGF/p75
Class: viral protein, recombination
Keywords: HIV, integration, transcription, viral protein, recombination
Deposited on
2005-09-24, released
2005-10-25
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-10-11, with a file datestamp of
2017-10-06.
Experiment type: XRAY
Resolution: 2.02 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Integrase (IN)
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: pol
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2b4ja_ - Chain 'B':
Compound: Integrase (IN)
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: pol
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2b4jb_ - Chain 'C':
Compound: PC4 and SFRS1 interacting protein
Species: Homo sapiens [TaxId:9606]
Gene: PSIP1, LEDGF
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2b4jc1, d2b4jc2 - Chain 'D':
Compound: PC4 and SFRS1 interacting protein
Species: Homo sapiens [TaxId:9606]
Gene: PSIP1, LEDGF
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2b4jd2, d2b4jd3 - Heterogens: PO4, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2b4jA (A:)
gshmhgqvdcspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklag
rwpvktvhtdngsnftsttvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvr
dqaehlktavqmavfihnkkrkggiggysagerivdiiatdiqtke
Sequence, based on observed residues (ATOM records): (download)
>2b4jA (A:)
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacwwagikqefviesmnkelkkiigqvrdqaehlktavqmavfihnk
ksagerivdiiatdi
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2b4jB (B:)
gshmhgqvdcspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklag
rwpvktvhtdngsnftsttvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvr
dqaehlktavqmavfihnkkrkggiggysagerivdiiatdiqtke
Sequence, based on observed residues (ATOM records): (download)
>2b4jB (B:)
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlktav
qmavfihnkkrsagerivdiiatdi
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2b4jC (C:)
gssmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
rfkvsqvimekstmlynkfknmflvgegdsvitqvlnk
Sequence, based on observed residues (ATOM records): (download)
>2b4jC (C:)
gssmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
rfkvsqvimekstmlynkfknm
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2b4jD (D:)
gssmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
rfkvsqvimekstmlynkfknmflvgegdsvitqvlnk
Sequence, based on observed residues (ATOM records): (download)
>2b4jD (D:)
gssmdsrlqrihaeiknslkidnldvnrciealdelaslqvtmqqaqkhtemittlkkir
rfkvsqvimekstmlynkfknm