PDB entry 1yyp

View 1yyp on RCSB PDB site
Description: Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54
Class: replication/transferase
Keywords: processivity fold (same fold as hsv ul42, pcna, and homotrimeric sliding clamps), replication-transferase complex
Deposited on 2005-02-25, released 2005-12-27
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.197
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase processivity factor
    Species: Human herpesvirus 5 [TaxId:10359]
    Gene: UL44
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16790
      • see remark 999 (204)
    Domains in SCOPe 2.05: d1yypa1, d1yypa2
  • Chain 'B':
    Compound: DNA polymerase
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yypA (A:)
mdrktrlsepptlalrlkpyktaiqqlrsviralkenttvtflptpslilqtvrshcvsk
itfnssclyitdksfqpktinnstpllgnfmyltsskdltkfyvqdisdlsakismcapd
fnmefssacvhgqdivresensavhvdldfgvvadllkwigphtrvkrnvkkapcptgtv
qilvhagppaikfiltngseleftsnnrvsfhgvknmrinvqlknfyqtllncavtklpc
tlrivtehdtllyvasrnglfavenflteepfqrgdpfdknyvgnsgksr

    Sequence, based on observed residues (ATOM records): (download) 
    >1yypA (A:)
epptlalrlkpyktaiqqlrsviralkenttvtflptpslilqtvrshcvskitfnsscl
yitdksfqpktinnstpllgnfmyltsskdltkfyvqdisdlsakismcapdfnmefssa
cvhgqdivresensavhvdldfgvvadllkwigptgtvqilvhagppaikfiltngsele
ftsnnrvsfhgvknmrinvqlknfyqtllncavtklpctlrivtehdtllyvasrnglfa
venflteep

  • Chain 'B':
    No sequence available.