PDB entry 1vqs
View 1vqs on RCSB PDB site
Description: Crystal structure of a nipsnap family protein with unknown function (atu4242) from agrobacterium tumefaciens str. c58 at 1.50 A resolution
Class: unknown function
Keywords: Ferredoxin-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, unknown function
Deposited on
2004-12-20, released
2005-01-11
The last revision prior to the SCOPe 2.05 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.152
AEROSPACI score: 0.66
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hypothetical protein AGR_L_1239
Species: Agrobacterium tumefaciens [TaxId:176299]
Gene: np_356412.1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8U857 (12-115)
- leader sequence (6-11)
- modified residue (12)
- modified residue (82)
- modified residue (106)
- modified residue (115)
Domains in SCOPe 2.05: d1vqsa_ - Chain 'B':
Compound: hypothetical protein AGR_L_1239
Species: Agrobacterium tumefaciens [TaxId:176299]
Gene: np_356412.1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8U857 (12-115)
- leader sequence (5-11)
- modified residue (12)
- modified residue (82)
- modified residue (106)
- modified residue (115)
Domains in SCOPe 2.05: d1vqsb_ - Chain 'C':
Compound: hypothetical protein AGR_L_1239
Species: Agrobacterium tumefaciens [TaxId:176299]
Gene: np_356412.1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8U857 (12-115)
- leader sequence (6-11)
- modified residue (12)
- modified residue (82)
- modified residue (106)
- modified residue (115)
Domains in SCOPe 2.05: d1vqsc_ - Chain 'D':
Compound: hypothetical protein AGR_L_1239
Species: Agrobacterium tumefaciens [TaxId:176299]
Gene: np_356412.1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8U857 (12-115)
- leader sequence (6-11)
- modified residue (12)
- modified residue (82)
- modified residue (106)
- modified residue (115)
Domains in SCOPe 2.05: d1vqsd_ - Chain 'E':
Compound: hypothetical protein AGR_L_1239
Species: Agrobacterium tumefaciens [TaxId:176299]
Gene: np_356412.1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8U857 (12-115)
- leader sequence (6-11)
- modified residue (12)
- modified residue (82)
- modified residue (106)
- modified residue (115)
Domains in SCOPe 2.05: d1vqse_ - Heterogens: SO4, MPD, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vqsA (A:)
mgsdkihhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpi
neivhiwafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
Sequence, based on observed residues (ATOM records): (download)
>1vqsA (A:)
hhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpineivhi
wafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1vqsB (B:)
mgsdkihhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpi
neivhiwafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
Sequence, based on observed residues (ATOM records): (download)
>1vqsB (B:)
ihhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpineivh
iwafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1vqsC (C:)
mgsdkihhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpi
neivhiwafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
Sequence, based on observed residues (ATOM records): (download)
>1vqsC (C:)
hhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpineivhi
wafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1vqsD (D:)
mgsdkihhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpi
neivhiwafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
Sequence, based on observed residues (ATOM records): (download)
>1vqsD (D:)
hhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpineivhi
wafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1vqsE (E:)
mgsdkihhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpi
neivhiwafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm
Sequence, based on observed residues (ATOM records): (download)
>1vqsE (E:)
hhhhhhmfyeirtyrlkngaipaylkvvedegieiqkshlgelvgyffseigpineivhi
wafsslddraerrarlmadprwlsflpkirdlievaenkimkparfsplm