PDB entry 1r0m

View 1r0m on RCSB PDB site
Description: Structure of Deinococcus radiodurans N-acylamino acid racemase at 1.3 : insights into a flexible binding pocket and evolution of enzymatic activity
Class: isomerase
Keywords: Racemase, ISOMERASE
Deposited on 2003-09-22, released 2004-09-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: 0.155
AEROSPACI score: 0.77 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: N-acylamino acid racemase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RYA6 (Start-374)
      • see remark 999 (93)
      • see remark 999 (147)
      • see remark 999 (157)
      • see remark 999 (251)
      • see remark 999 (314)
    Domains in SCOPe 2.08: d1r0ma1, d1r0ma2
  • Chain 'B':
    Compound: N-acylamino acid racemase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RYA6 (Start-374)
      • see remark 999 (93)
      • see remark 999 (147)
      • see remark 999 (157)
      • see remark 999 (251)
      • see remark 999 (314)
    Domains in SCOPe 2.08: d1r0mb1, d1r0mb2
  • Chain 'C':
    Compound: N-acylamino acid racemase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RYA6 (Start-374)
      • see remark 999 (93)
      • see remark 999 (147)
      • see remark 999 (157)
      • see remark 999 (251)
      • see remark 999 (314)
    Domains in SCOPe 2.08: d1r0mc1, d1r0mc2
  • Chain 'D':
    Compound: N-acylamino acid racemase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RYA6 (Start-374)
      • see remark 999 (93)
      • see remark 999 (147)
      • see remark 999 (157)
      • see remark 999 (251)
      • see remark 999 (314)
    Domains in SCOPe 2.08: d1r0md1, d1r0md2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1r0mA (A:)
mahtgrmfkieaaeivvarlplkfrfetsfgvqthkvvpllilhgegvqgvaegtmearp
myreetiagaldllrgtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwar
tlgvplgtllgghkeqvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpv
ratreafpdirltvdansaytladagrlrqldeydltyieqplawddlvdhaelarrirt
plcldesvasasdarkalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmle
sgigrahnihlstlsnfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldr
eflatvteaqeehra

    Sequence, based on observed residues (ATOM records): (download) 
    >1r0mA (A:)
rmfkieaaeivvarlplkthkvvpllilhgegvqgvaegtmearpmyreetiagaldllr
gtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwartlgvplgtllgghke
qvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpvratreafpdirltvd
ansaytladagrlrqldeydltyieqplawddlvdhaelarrirtplcldesvasasdar
kalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmlesgigrahnihlstls
nfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldreflatvteaqeehra

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1r0mB (B:)
mahtgrmfkieaaeivvarlplkfrfetsfgvqthkvvpllilhgegvqgvaegtmearp
myreetiagaldllrgtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwar
tlgvplgtllgghkeqvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpv
ratreafpdirltvdansaytladagrlrqldeydltyieqplawddlvdhaelarrirt
plcldesvasasdarkalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmle
sgigrahnihlstlsnfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldr
eflatvteaqeehra

    Sequence, based on observed residues (ATOM records): (download) 
    >1r0mB (B:)
rmfkieaaeivvarlplkthkvvpllilhgegvqgvaegtmearpmyreetiagaldllr
gtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwartlgvplgtllgghke
qvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpvratreafpdirltvd
ansaytladagrlrqldeydltyieqplawddlvdhaelarrirtplcldesvasasdar
kalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmlesgigrahnihlstls
nfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldreflatvteaqeehra

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1r0mC (C:)
mahtgrmfkieaaeivvarlplkfrfetsfgvqthkvvpllilhgegvqgvaegtmearp
myreetiagaldllrgtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwar
tlgvplgtllgghkeqvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpv
ratreafpdirltvdansaytladagrlrqldeydltyieqplawddlvdhaelarrirt
plcldesvasasdarkalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmle
sgigrahnihlstlsnfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldr
eflatvteaqeehra

    Sequence, based on observed residues (ATOM records): (download) 
    >1r0mC (C:)
rmfkieaaeivvarlplkthkvvpllilhgegvqgvaegtmearpmyreetiagaldllr
gtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwartlgvplgtllgghke
qvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpvratreafpdirltvd
ansaytladagrlrqldeydltyieqplawddlvdhaelarrirtplcldesvasasdar
kalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmlesgigrahnihlstls
nfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldreflatvteaqeehra

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1r0mD (D:)
mahtgrmfkieaaeivvarlplkfrfetsfgvqthkvvpllilhgegvqgvaegtmearp
myreetiagaldllrgtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwar
tlgvplgtllgghkeqvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpv
ratreafpdirltvdansaytladagrlrqldeydltyieqplawddlvdhaelarrirt
plcldesvasasdarkalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmle
sgigrahnihlstlsnfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldr
eflatvteaqeehra

    Sequence, based on observed residues (ATOM records): (download) 
    >1r0mD (D:)
rmfkieaaeivvarlplkthkvvpllilhgegvqgvaegtmearpmyreetiagaldllr
gtflpailgqtfanpeavsdalgsyrgnrmaramvemaawdlwartlgvplgtllgghke
qvevgvslgiqadeqatvdlvrrhveqgyrriklkikpgwdvqpvratreafpdirltvd
ansaytladagrlrqldeydltyieqplawddlvdhaelarrirtplcldesvasasdar
kalalgaggvinlkvarvgghaesrrvhdvaqsfgapvwcggmlesgigrahnihlstls
nfrlpgdtssasrywerdliqepleavdglmpvpqgpgtgvtldreflatvteaqeehra