PDB entry 1oy5

View 1oy5 on RCSB PDB site
Description: Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus
Class: transferase
Keywords: structural genomics, trmD, tRNA (m1G37) methyltransferase, BSGC structure funded by NIH, Protein Structure Initiative, PSI, Berkeley Structural Genomics Center, TRANSFERASE
Deposited on 2003-04-03, released 2003-11-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.28
AEROSPACI score: -1.8 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: TRMD OR AQ_1489
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oy5a_
  • Chain 'B':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: TRMD OR AQ_1489
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oy5b_
  • Chain 'C':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: TRMD OR AQ_1489
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oy5c_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1oy5A (A:)
mssnplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpyggl
pgmvlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegv
dervkkivdmeislgdfilsggeivalavidavsrvlpgvlsepqsiqedsfqnrwlgyp
vytrpreyrgmkvpeellsghhklielwklwhrientvkkrpdlipkdltelekdilnsi
lsgksfkewlkehkhll

    Sequence, based on observed residues (ATOM records): (download) 
    >1oy5A (A:)
nplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpygglpgm
vlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegvder
vkkivdmeislgdfilsggeivalavidavsrvlpgvlsepypvytrpreyrgmkvpeel
lsghhklielwklwhrientvkkrpdlipkdltelekd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1oy5B (B:)
mssnplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpyggl
pgmvlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegv
dervkkivdmeislgdfilsggeivalavidavsrvlpgvlsepqsiqedsfqnrwlgyp
vytrpreyrgmkvpeellsghhklielwklwhrientvkkrpdlipkdltelekdilnsi
lsgksfkewlkehkhll

    Sequence, based on observed residues (ATOM records): (download) 
    >1oy5B (B:)
nplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpygglpgm
vlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegvder
vkkivdmeislgdfilsggeivalavidavsrvlpgvlsepypvytrpreyrgmkvpeel
lsghhklielwklwhrientvkkrpdlipkdltelekd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1oy5C (C:)
mssnplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpyggl
pgmvlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegv
dervkkivdmeislgdfilsggeivalavidavsrvlpgvlsepqsiqedsfqnrwlgyp
vytrpreyrgmkvpeellsghhklielwklwhrientvkkrpdlipkdltelekdilnsi
lsgksfkewlkehkhll

    Sequence, based on observed residues (ATOM records): (download) 
    >1oy5C (C:)
nplrffvltifphiiscyseygivkqaikkgkvevypidlrefapkgqvddvpygglpgm
vlkpepiyeaydyvvenygkpfvlitepwgeklnqklvnelskkerimiicgryegvder
vkkivdmeislgdfilsggeivalavidavsrvlpgvlsepypvytrpreyrgmkvpeel
lsghhklielwklwhrientvkkrpdlipkdltelekd