PDB entry 1m8v

View 1m8v on RCSB PDB site
Description: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer
Class: RNA binding protein/RNA
Keywords: Protein-RNA complex, Sm protein, RNA BINDING PROTEIN-RNA COMPLEX
Deposited on 2002-07-26, released 2003-02-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9V0Y8
      • cloning artifact (3)
    Domains in SCOPe 2.08: d1m8va1, d1m8va2
  • Chain 'B':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vb_
  • Chain 'C':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vc_
  • Chain 'D':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vd_
  • Chain 'E':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8ve_
  • Chain 'F':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vf_
  • Chain 'G':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vg_
  • Chain 'H':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vh_
  • Chain 'I':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vi_
  • Chain 'J':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vj_
  • Chain 'K':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vk_
  • Chain 'L':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vl_
  • Chain 'M':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vm_
  • Chain 'N':
    Compound: putative snrnp sm-like protein
    Species: Pyrococcus abyssi [TaxId:29292]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m8vn_
  • Chain 'O':
    Compound: 5'-r(p*up*up*up*up*up*up*u)-3'
  • Chain 'P':
    Compound: 5'-r(p*up*up*up*up*up*up*u)-3'
  • Chain 'Q':
    Compound: 5'-r(p*up*up*up*up*up*up*u)-3'
  • Chain 'R':
    Compound: 5'-r(p*up*up*up*up*up*up*u)-3'
  • Chain 'S':
    Compound: 5'-r(p*up*up*up*up*up*up*u)-3'
  • Chain 'T':
    Compound: 5'-r(p*up*up*up*up*up*up*u)-3'
  • Chain 'U':
    Compound: 5'-r(p*up*up*up*up*up*up*u)-3'
  • Heterogens: CA, U, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1m8vA (A:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vA (A:)
aerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkiv
irgdnvlaispt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1m8vB (B:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vB (B:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1m8vC (C:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vC (C:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1m8vD (D:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vD (D:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1m8vE (E:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vE (E:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1m8vF (F:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vF (F:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1m8vG (G:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vG (G:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1m8vH (H:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vH (H:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1m8vI (I:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vI (I:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1m8vJ (J:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vJ (J:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1m8vK (K:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vK (K:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1m8vL (L:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vL (L:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1m8vM (M:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vM (M:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1m8vN (N:)
gamaerpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkryg
kivirgdnvlaisptee

    Sequence, based on observed residues (ATOM records): (download) 
    >1m8vN (N:)
erpldvihrsldkdvlvilkkgfefrgrligydihlnvvladaemiqdgevvkrygkivi
rgdnvlaispt

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    No sequence available.