PDB entry 1k9i

View 1k9i on RCSB PDB site
Description: Complex of DC-SIGN and GlcNAc2Man3
Class: sugar binding protein
Keywords: C-type lectin, protein carbohydrate complex, SUGAR BINDING PROTEIN
Deposited on 2001-10-29, released 2001-12-21
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.213
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ia_
  • Chain 'B':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ib_
  • Chain 'C':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ic_
  • Chain 'D':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9id_
  • Chain 'E':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ie_
  • Chain 'F':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9if_
  • Chain 'G':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ig_
  • Chain 'H':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ih_
  • Chain 'I':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ii_
  • Chain 'J':
    Compound: mDC-SIGN1B type I isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAK91854
    Domains in SCOPe 2.02: d1k9ij_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k9iA (A:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iA (A:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1k9iB (B:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iB (B:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1k9iC (C:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iC (C:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1k9iD (D:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iD (D:)
chpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnr
ftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnla
kfwickksaasc

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1k9iE (E:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iE (E:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1k9iF (F:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iF (F:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1k9iG (G:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iG (G:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1k9iH (H:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iH (H:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksa

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1k9iI (I:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iI (I:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1k9iJ (J:)
aerlchpcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqss
rsnrftwmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddk
cnlakfwickksaascsrdeeqflspapatpnpppa

    Sequence, based on observed residues (ATOM records): (download) 
    >1k9iJ (J:)
pcpwewtffqgncyfmsnsqrnwhdsitackevgaqlvviksaeeqnflqlqssrsnrft
wmglsdlnqegtwqwvdgspllpsfkqywnrgepnnvgeedcaefsgngwnddkcnlakf
wickksaa