PDB entry 1gpo
View 1gpo on RCSB PDB site
Description: crystal structure of the rationally designed antibody m41 as a fab fragment
Class: immunoglobulin
Keywords: protein engineering, antibody design, immunoglobulin structure, antigen-binding site, canonical conformation, complementarity-determining region
Deposited on
1997-03-27, released
1998-04-01
The last revision prior to the SCOP 1.73 freeze date was dated
1998-04-01, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.214
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: antibody m41
Species: synthetic construct, synthetic
Database cross-references and differences (RAF-indexed):
- EMBL CAC21717 (0-End)
- conflict (2)
- conflict (31-32)
- conflict (34)
- conflict (38)
- conflict (43)
- conflict (49-51)
- conflict (53)
- conflict (55)
- conflict (57)
- conflict (63)
- conflict (80)
- conflict (91)
- conflict (93)
- conflict (96-98)
- conflict (108)
Domains in SCOP 1.73: d1gpoh1, d1gpoh2 - Chain 'I':
Compound: antibody m41
Species: synthetic construct, synthetic
Database cross-references and differences (RAF-indexed):
- EMBL CAC21717 (0-End)
- conflict (2)
- conflict (31-32)
- conflict (34)
- conflict (38)
- conflict (43)
- conflict (49-51)
- conflict (53)
- conflict (55)
- conflict (57)
- conflict (63)
- conflict (80)
- conflict (91)
- conflict (93)
- conflict (96-98)
- conflict (108)
Domains in SCOP 1.73: d1gpoi1, d1gpoi2 - Chain 'L':
Compound: antibody m41
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1gpol1, d1gpol2 - Chain 'M':
Compound: antibody m41
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1gpom1, d1gpom2 - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1gpoH (H:)
evklqesgpslvkpsqtlsltcsvtgdsitsdfwswirqfpgnrleymgfvqysgetayn
pslksrisitrdtsknqyyldlnsvttedtavyycanwhgdywgqgttvtvssakttpps
vyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkivprdchhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1gpoH (H:)
evklqesgpslvkpsqtlsltcsvtgdsitsdfwswirqfpgnrleymgfvqysgetayn
pslksrisitrdtsknqyyldlnsvttedtavyycanwhgdywgqgttvtvssakttpps
vyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkivprd
- Chain 'I':
Sequence, based on SEQRES records: (download)
>1gpoI (I:)
evklqesgpslvkpsqtlsltcsvtgdsitsdfwswirqfpgnrleymgfvqysgetayn
pslksrisitrdtsknqyyldlnsvttedtavyycanwhgdywgqgttvtvssakttpps
vyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkivprdchhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1gpoI (I:)
evklqesgpslvkpsqtlsltcsvtgdsitsdfwswirqfpgnrleymgfvqysgetayn
pslksrisitrdtsknqyyldlnsvttedtavyycanwhgdywgqgttvtvssakttpps
vyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkivp
- Chain 'L':
Sequence, based on SEQRES records: (download)
>1gpoL (L:)
dieltqspatlsvtpgnsvsiscrasqslvnedgntylfwyqqkshesprllikyasqsi
sgipsrfsgsgsgtdftlsinsvetedlavyfcqqitdwpftfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>1gpoL (L:)
dieltqspatlsvtpgnsvsiscrasqslvnedgntylfwyqqkshesprllikyasqsi
sgipsrfsgsgsgtdftlsinsvetedlavyfcqqitdwpftfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnr
- Chain 'M':
Sequence, based on SEQRES records: (download)
>1gpoM (M:)
dieltqspatlsvtpgnsvsiscrasqslvnedgntylfwyqqkshesprllikyasqsi
sgipsrfsgsgsgtdftlsinsvetedlavyfcqqitdwpftfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>1gpoM (M:)
dieltqspatlsvtpgnsvsiscrasqslvnedgntylfwyqqkshesprllikyasqsi
sgipsrfsgsgsgtdftlsinsvetedlavyfcqqitdwpftfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne