PDB entry 1eg0

View 1eg0 on RCSB PDB site
Description: fitting of components with known structure into an 11.5 a cryo-em map of the e.coli 70s ribosome
Class: ribosome
Keywords: 70s ribosome, low resolution model
Deposited on 2000-02-11, released 2000-03-06
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-07.
Experiment type: EM
Resolution: 11.5 Å
R-factor: N/A
AEROSPACI score: -0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (s4 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P81288 (0-158)
      • expression tag (0)
    Domains in SCOPe 2.05: d1eg0a_
  • Chain 'B':
    Compound: protein (s5 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0b_
  • Chain 'C':
    Compound: protein (s6 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0c_
  • Chain 'D':
    Compound: protein (s7 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0d_
  • Chain 'E':
    Compound: protein (s8 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PIR A53870 (Start-137)
    Domains in SCOPe 2.05: d1eg0e_
  • Chain 'F':
    Compound: protein (s15 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0f_
  • Chain 'G':
    Compound: protein (s17 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0g_
  • Chain 'H':
    Compound: protein (s20 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1EG0 (0-99)
    Domains in SCOPe 2.05: d1eg0h_
  • Chain 'I':
    Compound: fragment of 16s rRNA helix 23
    Species: Escherichia coli [TaxId:562]
  • Chain 'J':
    Compound: protein (ribosomal protein l6)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0j_
  • Chain 'K':
    Compound: protein (ribosomal protein l11)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0k_
  • Chain 'L':
    Compound: fragment of 23s rRNA
    Species: Escherichia coli [TaxId:562]
  • Chain 'M':
    Compound: helix 95 of 23s rRNA
    Species: Escherichia coli [TaxId:562]
  • Chain 'N':
    Compound: protein (ribosomal protein l1)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1eg0n_
  • Chain 'O':
    Compound: formyl-methionyl-tRNA
    Species: Escherichia coli [TaxId:562]

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1eg0A (A:)
mklseyglqlqekqklrhmygvnerqfrktfeeagkmpgkhgenfmillesrldnlvyrl
glartrrqarqlvthghilvdgsrvnipsyrvkpgqtiavreksrnlqvikealeannyi
pdylsfdpekmegtytrlperselpaeinealivefysr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1eg0B (B:)
mrrinpnkleleervvavnrvakvvkggrrlrfsalvvvgdknghvgfgtgkaqevpeai
rkaiedakknlievpivgttiphevighfgageiilkpasegtgviaggparavlelagi
sdilsksigsntpinmvratfdglkqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0B (B:)
inpnkleleervvavnrvakvvkggrrlrfsalvvvgdknghvgfgtgkaqevpeairka
iedakknlievpivgttiphevighfgageiilkpasegtgviaggparavlelagisdi
lsksigsntpinmvratfdglkqlk

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1eg0C (C:)
mrryevnivlnpnldqsqlalekeiiqralenygarvekveelglrrlaypiakdpqgyf
lwyqvempedrvndlarelrirdnvrrvmvvksqepf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1eg0D (D:)
marrrraevrqlqpdlvygdvlvtafinkimrdgkknlaarifydackiiqektgqeplk
vfkqavenvkprmevrsrrvgganyqvpmevsprrqqslalrwlvqaanqrperraavri
ahelmdaaegkggavkkkedvermae

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0D (D:)
lqpdlvygdvlvtafinkimrdgkknlaarifydackiiqektgqeplkvfkqavenvkp
rmevrsrrvgganyqvpmevsprrqqslalrwlvqaanqrperraavriahelmdaaegk
ggavkkkedvermae

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1eg0E (E:)
mltdpiadmltrirnatrvykestdvpasrfkeeilrilaregfikgyervdvdgkpylr
vylkygprrqgpdprpeqvihhirriskpgrrvyvgvkeiprvrrglgiailstskgvlt
drearklgvggelicevw

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0E (E:)
tdpiadmltrirnatrvykestdvpasrfkeeilrilaregfikgyervdvdgkpylrvy
lkygprrqgpdprpeqvihhirriskpgrrvyvgvkeiprvrrglgiailstskgvltdr
earklgvggelicevw

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1eg0F (F:)
mpitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmv
gqrrrllrylqredperyralieklgirg

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0F (F:)
pitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmvg
qrrrllrylqredperyralieklgirg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1eg0G (G:)
sernqrkvyvgrvvsdkmdktitvlvetykkhplygkrvkyskkykahdehneakvgdiv
kimetrplsatkrfrlveivekavragagagaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0G (G:)
qrkvyvgrvvsdkmdktitvlvetykkhplygkrvkyskkykahdehneakvgdivkime
trplsatkrfrlveivekavragagagaa

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1eg0H (H:)
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  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1eg0J (J:)
msrvgkkpieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekh
hralhgttrsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeeg
leievpsqtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrl

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0J (J:)
pieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhhralhgt
trsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegleievps
qtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrl

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1eg0K (K:)
makkvaaqiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitv
yedksftfiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnans
leaamkiiegtaksmgievv

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0K (K:)
qiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitvyedksft
fiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnansleaamki
iegtaksmgievv

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1eg0N (N:)
mpkhgkryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvr
gtvslphglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdv
mgavgsklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkas
fppekladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs

    Sequence, based on observed residues (ATOM records): (download) 
    >1eg0N (N:)
allekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrgtvslphgl
gkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvmgavgsklg
rilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkasfppekladn
irafiraleahkpegakgtflrsvyvtttmgpsvrinphs

  • Chain 'O':
    No sequence available.